Cited by 12RNA and protein synthesis mechanismsBiochemical and Molecular ResearchRNA modifications and cancer

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The oncogene SLC35F2 is a high-specificity transporter for the micronutrients queuine and queuosine

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Burtnyak, Lyubomyr, Yuan, Yifeng, Stojek, Erwina, Pan, Xiaobei, Gunaratne, Lankani, Silveira d’Almeida, Gabriel, Fergus, Claire, Martinelli, Maria, J. Reed, Colbie, Fernandez, Jessie, Patel, Bhargesh Indravadan, Marquez, Isaac, Ehrenhofer-Murray, Ann E., Swairjo, Manal A., Alfonzo, Juan D., Green, Brian D., Kelly, Vincent P., de Crécy-Lagard, Valérie·2025·Proceedings of the National Academy of Sciences

Published version of a preprint

Abstract

The nucleobase queuine (q) and its nucleoside queuosine (Q) are micronutrients derived from bacteria that are acquired from the gut microbiome and/or diet in humans. Following cellular uptake, Q is incorporated at the wobble base (position 34) of tRNAs that decode histidine, tyrosine, aspartate, and asparagine codons, which is important for efficient translation. Early studies suggested that cytosolic uptake of queuine is mediated by a selective transporter that is regulated by mitogenic signals, but the identity of this transporter has remained elusive. Here, through a cross-species bioinformatic search and genetic validation, we have identified the solute carrier family member SLC35F2 as a unique transporter for both queuine and queuosine in Schizosaccharomyces pombe and Trypanosoma brucei . Furthermore, gene disruption in human HeLa cells revealed that SLC35F2 is the sole transporter for queuosine (K m 174 nM) and a high-affinity transporter for the queuine nucleobase (K m 67 nM), with the additional presence of second low-affinity queuine transporter (K m 259 nM). Ectopic expression of labeled SLC35F2 reveals localization to the cell membrane and Golgi apparatus via immunofluorescence. Competition uptake studies show that SLC35F2 is not a general transporter for other canonical ribonucleobases or ribonucleosides but selectively imports q and Q. The identification of SLC35F2, an oncogene, as the transporter of both q and Q advances our understanding of how intracellular levels of queuine and queuosine are regulated and how their deficiency contributes to a variety of pathophysiological conditions, including neurological disorders and cancer.

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Research works printed but not linked: 63

  1. 10.1073/pnas.1809045115 · DOI
  2. 10.3390/nu7042897 · DOI
  3. 10.1016/j.cell.2023.10.026 · DOI
  4. 10.1093/nar/gkac1231 · DOI
  5. 10.3181/00379727-179-42128 · DOI
  6. 10.1007/s00216-024-05489-1 · DOI
  7. M. S. Elliott, R. W. Trewyn, J. R. Katze, Inhibition of queuine uptake in cultured human fibroblasts by phorbol-12,13-didecanoate1. Cancer Res. 45, 1079–1085 (1985).
  8. 10.1016/0167-4889(95)00184-0 · DOI
  9. 10.1016/0006-291X(90)91406-I · DOI
  10. 10.1021/cb500278k · DOI
  11. 10.1093/nar/gkaa1004 · DOI · Paper page
  12. 10.1093/nar/gkv1070 · DOI · Paper page
  13. 10.1016/j.jmb.2016.05.021 · DOI
  14. 10.3390/biologics4030017 · DOI
  15. 10.1016/j.febslet.2008.10.016 · DOI
  16. 10.1186/1752-0509-3-93 · DOI
  17. F. Van den Bossche Residence of the nucleotide sugar transporter family members SLC35F1 and SLC35F6 in the endosomal/lysosomal pathway. Int. J. Mol. Sci. 25 6718 (2024). · DOI
  18. 10.1093/nar/13.19.6881 · DOI
  19. 10.1093/nar/gkab567 · DOI
  20. F. Frommelt The solute carrier superfamily interactome. bioRxiv [Preprint] (2024). https://doi.org/10.1101/2024.09.30.615192 (Accessed 15 April 2025). · DOI
  21. 10.1126/science.1260419 · DOI · Paper page
  22. 10.1093/nar/gkz063 · DOI
  23. 10.1016/j.bbrc.2022.07.104 · DOI
  24. 10.3390/biom7010014 · DOI
  25. 10.1093/nar/gkab1204 · DOI
  26. 10.1080/15476286.2017.1377878 · DOI
  27. 10.1093/genetics/iyae007 · DOI
  28. L. Bu, G. Jiang, F. Yang, J. Liu, J. Wang, Highly expressed SLC35F2 in non-small cell lung cancer is associated with pathological staging. Mol. Med. Rep. 4, 1289–1293 (2011).
  29. 10.1111/cas.13478 · DOI
  30. 10.2147/OTT.S229332 · DOI
  31. 10.1371/journal.pone.0253216 · DOI
  32. 10.1016/S0959-440X(00)00128-7 · DOI
  33. 10.1038/s41580-020-00294-x · DOI
  34. 10.1016/j.mam.2012.12.004 · DOI
  35. 10.1016/j.csbj.2019.08.002 · DOI
  36. 10.3390/molecules25235755 · DOI
  37. 10.1046/j.1432-1327.2001.02265.x · DOI
  38. 10.1038/s41467-018-06003-9 · DOI
  39. 10.1146/annurev.biochem.67.1.49 · DOI
  40. 10.1016/j.jacc.2014.01.007 · DOI
  41. 10.1038/s41594-019-0225-y · DOI
  42. 10.7554/eLife.45221 · DOI
  43. C. Baeza-Delgado M. A. Marti-Renom I. Mingarro Structure-based statistical analysis of transmembrane helices. Eur. Biophys. J. 42 199–207 (2013). · DOI
  44. J. Hallgren DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks. bioRxiv [Preprint] (2022). https://doi.org/10.1101/2022.04.08.487609 (Accessed 15 April 2025). · DOI
  45. 10.2133/dmpk.24.91 · DOI
  46. 10.1006/geno.1996.4595 · DOI
  47. 10.3390/cells10010080 · DOI
  48. 10.1016/j.bbagen.2023.130454 · DOI
  49. 10.1186/1475-2867-13-73 · DOI
  50. 10.1016/j.biomaterials.2020.120295 · DOI
  51. 10.1038/s41592-021-01101-x · DOI · Paper page
  52. 10.1016/S0022-2836(05)80360-2 · DOI · Paper page
  53. 10.1093/nar/gkab1112 · DOI · Paper page
  54. 10.1038/nbt.3988 · DOI · Paper page
  55. 10.1021/acs.biochem.9b00735 · DOI
  56. 10.1101/gr.1239303 · DOI · Paper page
  57. 10.1093/nar/gkac993 · DOI
  58. 10.1038/s41467-022-34630-w · DOI
  59. 10.1186/1471-2148-10-210 · DOI
  60. 10.1371/journal.pone.0009490 · DOI · Paper page
  61. 10.1093/nar/gkae268 · DOI
  62. 10.1093/nar/gkn322 · DOI
  63. 10.1093/nar/gku316 · DOI · Paper page

Metadata

Authors
Burtnyak, L., Yuan, Y., Stojek, E., Pan, X., Gunaratne, L., Silveira d’Almeida, G., Fergus, C., Martinelli, M., J. Reed, C., Fernandez, J., Patel, B. I., Marquez, I., Ehrenhofer-Murray, A. E., Swairjo, M. A., Alfonzo, J. D., Green, B. D., Kelly, V. P., & de Crécy-Lagard, V.
Affiliations
  • Trinity College Dublin (IE)
  • University of Florida (US)
  • Queen's University (CA)
  • Brown University (US)
  • Department of Molecular Biology, Cell Biology and Biochemistry and the Brown ribonucleic acid Center, Brown University
  • Department of Microbiology and Cell cience, University of Florida
  • Humboldt-Universität zu Berlin (DE)
  • San Diego State University (US)
  • Institut für Biologie, Lebenswissenschaftliche Fakultät, Humboldt-Universität zu Berlin
Corresponding author
Kelly, Vincent P.
Venue
Proceedings of the National Academy of Sciences
Published
2025-06-17
Volume
122
Issue
25
Pages
e2425364122-e2425364122
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W4411360133
Cited by
12
References
2
Citations by year
2026: 8 · 2025: 4
FWCI
3.61
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • Research Portal (Queen's University Belfast) (submittedVersion, cc-by-nc-nd)
Funders
  • HHS | NIH (GM132254, GM146075)
  • Science Foundation Ireland (HRB-USIRL-2019-2)
  • UKRI | Medical Research Council (MC PC 18038)
  • Health and Social Care in Northern Ireland (STL/5460/18)
  • Deutsche Forschungsgemeinschaft (EH237/ 19-1)
  • Irish Research Council (EPSPG/2022/390)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Molecular Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA modifications and cancer
Keywords
queuine, queuosine, nucleobase transport, nucleoside transport, tRNA, oncogenes, Schizosaccharomyces pombe, Trypanosoma brucei, HeLa cells, Golgi apparatus
MeSH terms
Biological Transport, Guanine, HeLa Cells, Humans, Nucleoside Q, RNA, Transfer, Schizosaccharomyces, Trypanosoma brucei brucei, Micronutrients, Membrane Transport Proteins, Schizosaccharomyces pombe Proteins

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