The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Matching Sequences under Deletion/Insertion Constraints
Open accessAbstract
Given two finite sequences, we wish to find the longest common subsequences satisfying certain deletion/insertion constraints. Consider two successive terms in the desired subsequence. The distance between their positions must be the same in the two original sequences for all but a limited number of such pairs of successive terms. Needleman and Wunsch gave an algorithm for finding longest common subsequences without constraints. This is improved from the viewpoint of computational economy. An economical algorithm is then elaborated for finding subsequences satisfying deletion/insertion constraints. This result is useful in the study of genetic homology based on nucleotide or amino-acid sequences.
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Cites
Needleman, S. B., & Wunsch, C. D. (1970) · Journal of Molecular Biology · doi:10.1016/0022-2836(70)90057-4 · Cited by 11,288
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Lipman, D. J., & Pearson, W. R. (1985) · Science · doi:10.1126/science.2983426 · Cited by 4,033
Rapid similarity searches of nucleic acid and protein data banks.
Wilbur, W. J., & Lipman, D. J. (1983) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.80.3.726 · Cited by 1,546
The Error Probability of Maximum-Likelihood Decoding over Two Deletion/Insertion Channels
Sabary, O., Yaakobi, E., & Yucovich, A. (2020) · 2020 IEEE International Symposium on Information Theory (ISIT) · doi:10.1109/isit44484.2020.9174488 · Cited by 10
Metadata
- Authors
- Sankoff, D.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 1972-01
- Volume
- 69
- Issue
- 1
- Pages
- 4-6
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2044966609
- Cited by
- 296
- References
- 1
- FWCI
- 7.42
- Type
- journal article
- Language
- en
- Open access
- green
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