The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Protein tertiary structure recognition using optimized Hamiltonians with local interactions.
Open accessAbstract
Protein folding codes embodying local interactions including surface and secondary structure propensities and residue-residue contacts are optimized for a set of training proteins by using spin-glass theory. A screening method based on these codes correctly matches the structure of a set of test proteins with proteins of similar topology with 100% accuracy, even with limited sequence similarity between the test proteins and the structural homologs and the absence of any structurally similar proteins in the training set.
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Citations
Cites
Kabsch, W., & Sander, C. (1983) · Biopolymers · doi:10.1002/bip.360221211 · Cited by 15,320
Spin Glass Theory and Beyond: An Introduction to the Replica Method and Its Applications
Mezard, M., Parisi, G., & Virasoro, M. (1986) · World Scientific Lecture Notes in Physics · doi:10.1142/0271 · Cited by 3,653
Chou, P. Y., & Fasman, G. D. (1974) · Biochemistry · doi:10.1021/bi00699a001 · Cited by 2,172
A lattice model for protein structure prediction at low resolution.
Hinds, D. A., & Levitt, M. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.7.2536 · Cited by 217
Cited by
Funnels, pathways, and the energy landscape of protein folding: A synthesis
Bryngelson, J. D., Onuchic, J. N., Socci, N. D., & Wolynes, P. G. (1995) · Proteins: Structure, Function, and Bioinformatics · doi:10.1002/prot.340210302 · Cited by 2,648
“In addition, molecular dynamics calculations using associative memory Hamiltonians optimized in this way reliably gave native-like structures [83, 84].”
BackgroundSelf-citationTHEORY OF PROTEIN FOLDING: The Energy Landscape Perspective
Onuchic, J. N., Luthey-Schulten, Z., & Wolynes, P. G. (1997) · Annual Review of Physical Chemistry · doi:10.1146/annurev.physchem.48.1.545 · Cited by 2,210
Self-citationPrinciples of protein folding — A perspective from simple exact models
Dill, K. A., Bromberg, S., Yue, K., Chan, H. S., Fiebig, K. M., Yee, D. P., & Thomas, P. D. (1995) · Protein Science · doi:10.1002/pro.5560040401 · Cited by 1,525
Clementi, C., Nymeyer, H., & Onuchic, J. N. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3693 · Cited by 1,240
Global Optimization of Clusters, Crystals, and Biomolecules
Wales, D. J., & Scheraga, H. A. (1999) · Science · doi:10.1126/science.285.5432.1368 · Cited by 1,114
Metadata
- Authors
- Goldstein, R. A., Luthey-Schulten, Z. A., & Wolynes, P. G.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 1992-10
- Volume
- 89
- Issue
- 19
- Pages
- 9029-9033
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W1998072661
- Cited by
- 220
- References
- 4
- FWCI
- 4.58
- Type
- journal article
- Language
- en
- Open access
- green
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- Goldstein, R. A., Luthey-Schulten, Z. A., & Wolynes, P. G. (1992). Protein tertiary structure recognition using optimized Hamiltonians with local interactions. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.89.19.9029
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