Transcription repression by Xenopus ET and its human ortholog TBX3, a gene involved in ulnar-mammary syndrome
Open accessAbstract
T box ( Tbx ) genes are a family of developmental regulators with more than 20 members recently identified in invertebrates and vertebrates. Mutations in Tbx genes have been found to cause several human diseases. Our understanding of functional mechanisms of Tbx products has come mainly from the prototypical T / Brachyury , which is a transcription activator. We previously discovered ET , a Tbx gene expressed in Xenopus embryos. We report here that ET is an ortholog of the human Tbx3 and that ET is a repressor of basal and activated transcription. Functional dissection of the ET protein reveals a novel transcription-repression domain highly conserved among ET, human TBX3, and TBX2. These results reveal a new transcription repressor domain, show the existence of a subfamily of transcription repressors in the Tbx superfamily, and provide a basis for understanding etiology of diseases caused by Tbx3 mutations.
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The repression domain is essential for Tbx2/3-mediated cell senescence and tumorigenesis.
“Other studies have revealed that such an RD is essential for Tbx2/3-mediated cell senescence and tumorigenesis.19,44”
From Novel HDAC5-interacting motifs of Tbx3 are essential for the suppression of E-cadherin expression and for the promotion of metastasis in hepatocellular carcinoma (2018) · cites this paper as [19]
The Results (page not provided) show that the conserved Tbx2/3 repression domain is required for transcriptional repression. The paper does not establish that this domain is essential for cell senescence or tumorigenesis. (LLM, conf=0.86)
Experimental — accuracy not yet measuredTBX3 has a complex dual transcriptional regulatory function.
“Studies have shown that TBX3 has a complex dual transcriptional regulatory function.”
From TBX3 shapes an immunosuppressive microenvironment and induces immunotherapy resistance (2025) · cites this paper as [59]
The Results show that a human TBX3 domain represses transcription. The Discussion describes a different, N-terminal region of Xenopus ET that can weakly activate or repress transcription depending on context, but says its significance for human TBX3 remains unclear. Thus the paper does not establish a dual regulatory function for TBX3 itself. (LLM, conf=0.86)
Experimental — accuracy not yet measuredThe Tbx3 repression domain is highly conserved between Tbx2 and Tbx3 in vertebrates.
“This RD is highly conserved between Tbx2 and Tbx3 in vertebrates.19,35”
Tbx3 shares a highly conserved DNA-binding domain and repression domain with Tbx2.
“It has been shown that Tbx3 shares a highly conserved DNA-binding domain and repression domain (RD) with Tbx2.19–21”
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- Authors
- He, M.-L., Wen, L., Campbell, C. E., Wu, J. Y., & Rao, Y.
- Affiliations
- Cleveland Clinic (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 1999-08-31
- Volume
- 96
- Issue
- 18
- Pages
- 10212-10217
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC17868
- OpenAlex
- W2018078167
- Cited by
- 120
- References
- 98
- Citations by year
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- FWCI
- 3.10
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Science Foundation (9723173)
- John Merck Fund
- National Institutes of Health
- National Eye Institute (R01EY014576)
- National Cancer Institute (R01CA114197)
- National Institute of General Medical Sciences (R01GM070967)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK048796, DK48796)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Developmental Biology › Congenital limb and hand anomalies
- Keywords
- TBX3, TBX2, T-box genes, transcriptional repression, ulnar-mammary syndrome, Xenopus embryo, Brachyury, transcriptional regulation
- MeSH terms
- Congenital Abnormalities, Amino Acid Sequence, Animals, Breast, Cell Line, Embryo, Nonmammalian, Humans, Molecular Sequence Data, Recombinant Fusion Proteins, Repressor Proteins, Syndrome, Transcription Factors, Transcription, Genetic, Ulna, Xenopus laevis, Sequence Alignment, Sequence Homology, Amino Acid, Gene Expression Regulation, Developmental, T-Box Domain Proteins, Xenopus Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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