Apolipoprotein E4 domain interaction mediates detrimental effects on mitochondria and is a potential therapeutic target for Alzheimer disease
Open accessAbstract
Apolipoprotein (apo) E4 is the major genetic risk factor for late-onset Alzheimer disease (AD). ApoE4 assumes a pathological conformation through an intramolecular interaction mediated by Arg-61 in the amino-terminal domain and Glu-255 in the carboxyl-terminal domain, referred to as apoE4 domain interaction. Because AD is associated with mitochondrial dysfunction, we examined the effect of apoE4 domain interaction on mitochondrial respiratory function. Steady-state amounts of mitochondrial respiratory complexes were examined in neurons cultured from brain cortices of neuron-specific enolase promoter-driven apoE3 (NSE-apoE3) or apoE4 (NSE-apoE4) transgenic mice. All subunits of mitochondrial respiratory complexes assessed were significantly lower in NSE-apoE4 neurons compared with NSE-apoE3 neurons. However, no significant differences in levels of mitochondrial complexes were detected between astrocytes expressing different apoE isoforms driven by the glial fibrillary acidic protein promoter, leading to our conclusion that the effect of apoE4 is neuron specific. In neuroblastoma Neuro-2A (N2A) cells, apoE4 expression reduced the levels of mitochondrial respiratory complexes I, IV, and V. Complex IV enzymatic activity was also decreased, lowering mitochondrial respiratory capacity. Mutant apoE4 (apoE4-Thr-61) lacking domain interaction did not induce mitochondrial dysfunction in N2A cells, indicating that the effect is specific to apoE4-expressing cells and dependent on domain interaction. Consistent with this finding, treatment of apoE4-expressing N2A cells with a small molecule that disrupts apoE4 domain interaction restored mitochondrial respiratory complex IV levels. These results suggest that pharmacological intervention with small molecules that disrupt apoE4 domain interaction is a potential therapeutic approach for apoE4-carrying AD subjects.
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Fragments of APOE, which are more abundant with APOE4 than with APOE3, can cause neuronal mitochondrial dysfunction in vitro.
“In vitro studies have shown that fragments of APOE, which are more abundant with APOE4 than with APOE3, can cause neuronal mitochondrial dysfunction165,166.”
From Multifaceted roles of APOE in Alzheimer disease (2024) · cites this paper as [166]
The Discussion (page unavailable) reports that an apoE4 fragment perturbs mitochondrial respiratory-complex activity in N2A cells, supporting the in vitro dysfunction claim. It does not say that APOE fragments are more abundant with APOE4 than with APOE3. The paper’s own experiments examine full-length apoE4 rather than establishing that fragment-abundance comparison. (LLM, conf=0.86)
Experimental — accuracy not yet measuredSome studies indicated mitochondrial downregulation and decreased ATP production, contrary to the authors' findings of mitochondrial upregulation and enhanced ATP production in APOE4 cells.
“However, contrary to our findings of mitochondrial upregulation and enhanced ATP production in APOE4 cells, some studies indicated mitochondrial downregulation and decreased ATP production.”
From APOE4 Increases Energy Metabolism in APOE-Isogenic iPSC-Derived Neurons (2024) · cites this paper as [32]
The Results section (page not provided) reports lower levels of mitochondrial respiratory complexes and reduced respiratory capacity in apoE4-expressing cells, supporting mitochondrial downregulation. The paper does not report a direct measurement of decreased ATP production; its measurements of ATP synthase subunits do not establish that part of the claim. The citing authors’ contrasting findings are their own, not attributed to this source. (LLM, conf=0.86)
Experimental — accuracy not yet measuredSome ApoE4 mouse phenotypes are believed to arise from an allele-specific conformation of ApoE4.
“Some of these phenotypes are believed to arise from an allele-specific conformation of ApoE4: a unique arginine at position 112 (cysteine in the other two isoforms) shifts the hinge region of the protein, enabling the N-terminal domain (residues 1–167) to directly interact with the C-terminal domain (residues 206–299) [29].”
From Dyslipidemia-Induced Mitochondrial Dysfunctions in the Brains Does Not Reach Pathological Levels in the ApoE-Knockout Mice (2026) · cites this paper as [30]
The paper’s introduction describes an ApoE4-specific interaction between its N- and C-terminal domains mediated by Arg-112, and the Discussion links domain interaction to neurodegenerative pathology and a mild memory deficit in mice. Our copy does not say that Arg-112 shifts a hinge region or give the cited residue ranges (1–167 and 206–299). (LLM, conf=0.84)
Experimental — accuracy not yet measuredApoE-knockout is a more suitable model than ApoE4 mutants to study dyslipidemia because the E4 allele manifests an isoform-specific structural conformation that produces allele-specific effects.
“To answer this question, ApoE-knockout is a more suitable model than ApoE4 mutants to study dyslipidemia because the E4 allele manifests an isoform-specific structural conformation that produces allele-specific effects.”
From Dyslipidemia-Induced Mitochondrial Dysfunctions in the Brains Does Not Reach Pathological Levels in the ApoE-Knockout Mice (2026) · cites this paper as [30]
The paper describes an apoE4-specific domain interaction and associated isoform-specific effects (opening section and Discussion). It does not say that apoE-knockout is a more suitable model than apoE4 mutants for studying dyslipidemia; its comparisons concern primarily neuronal and mitochondrial effects. (LLM, conf=0.88)
Experimental — accuracy not yet measuredApoE4 disrupts brain mitochondrial function via multiple mechanisms.
“given that ApoE4 disrupts brain mitochondrial function via multiple mechanisms (Chen et al., 2011; Nuriel et al., 2017; Tambini et al., 2016; Zhao et al., 2017b)”
From ApoE4 Impairs Neuron-Astrocyte Coupling of Fatty Acid Metabolism (2021) · cites this paper as Chen et al., 2011
The Discussion reports that ApoE4 causes mitochondrial respiratory dysfunction in neuronal cells through domain interaction and describes reduced expression of mitochondrial respiratory complexes. It also discusses other possible mechanisms, but says the mechanism is not known in detail. The paper therefore supports mitochondrial disruption in neuronal cells, not an established finding that ApoE4 disrupts brain mitochondrial function through multiple mechanisms. (LLM, conf=0.85)
Experimental — accuracy not yet measured
ApoE fragments escape the secretory pathway into the cytosol.
“The resulting apoE fragments escape the secretory pathway into the cytosol”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
The Discussion (page not provided) says neuronal apoE can be cleaved into fragments and that an apoE4 fragment mislocalized to mitochondria when expressed in N2A cells. It does not say the fragments escape the secretory pathway into the cytosol; it describes mitochondrial targeting of proteolytic fragments in this study as a possibility, not an established route. (LLM, conf=0.81)
Experimental — accuracy not yet measuredThe aberrant proteolytic processing of apoE4 and consequent neurotoxicity can be blocked by treating apoE4-expressing cells with small-molecule structure correctors, which convert apoE4 to an apoE3-like conformation and prevent apoE4 fragment generation.
“The aberrant proteolytic processing of apoE4 and consequent neurotoxicity can be blocked by treating apoE4-expressing cells with small-molecule “structure correctors,” which convert apoE4 to an apoE3-like conformation and prevent apoE4 fragment generation [12, 13, 18, 19].”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measuredApoE fragments engage in abnormal interactions in the cytosol that lead to neurodegeneration.
“where they engage in abnormal interactions that lead to neurodegeneration [17–19]”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
The Discussion (page not available in our copy) reports that an apoE4 fragment can bind mitochondrial respiratory-complex subunits and impair their activity. It does not place those interactions in the cytosol or establish that the fragment interactions lead to neurodegeneration; the paper links neurodegeneration more broadly to apoE4 domain interaction. (LLM, conf=0.83)
Experimental — accuracy not yet measuredPrevious studies have linked each of the major Alzheimer's disease pathological alterations and brain aging to mitochondrial changes, which links ApoE4 to alterations in mitochondria and to Alzheimer's disease progression.
“previous studies have linked each of these pathological alterations and brain aging to mitochondrial changes, which in turn links ApoE4 to alterations in this organelle [22] and to AD progression.”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
The Discussion (page unavailable) links amyloid β, presenilin and Tau to mitochondria and reports that apoE4 induces mitochondrial respiratory dysfunction. It describes that dysfunction as a likely early event in AD pathology, but our copy does not establish the claimed link between brain aging and mitochondrial changes. (LLM, conf=0.82)
Experimental — accuracy not yet measuredNSE-ApoE4 transgenic mice show deficits in learning and memory in an age-dependent way, more accentuated when ApoE4 is expressed by neurons rather than glial cells, compared to NSE-ApoE3 mice.
“NSE-ApoE4 transgenic mice showed deficits in learning and memory, in an age-dependent way, and these changes were more accentuated when ApoE4 was expressed by neurons rather than glial cells, when compared to NSE-ApoE3 mice [22].”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
The introductory passage reports age-dependent learning and memory deficits in NSE-apoE4 mice but not NSE-apoE3 mice. It also says apoE4’s neuropathogenic effects are more pronounced with neuronal than glial expression; it does not specifically compare learning and memory deficits between those expression conditions. (LLM, conf=0.82)
Experimental — accuracy not yet measuredN2a cells stably expressing ApoE4 showed reduced levels of mitochondrial respiratory complexes (Cx) I, IV and V, while cortical neurons from NSE-ApoE4 showed reduced levels of all subunits, relatively to respective ApoE3-expressing controls.
“N2a cells stably expressing ApoE4 showed reduced levels of mitochondrial respiratory complexes (Cx) I, IV and V, while cortical neurons from NSE-ApoE4 showed reduced levels of all subunits, relatively to respective ApoE3-expressing controls.”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measuredRecent in vitro studies found that apoE4 expressed in neurons, but not in astrocytes, reduces mitochondrial function.
“Recent in vitro studies have found that apoE4 expressed in neurons -but not in astrocytes - reduces the mitochondrial function [41].”
From Plasma levels of apolipoprotein E, APOE genotype and risk of dementia and ischemic heart disease: A review (2016) · cites this paper as [41]
Chen and colleagues observed changes in respiratory chain complexes in neurons but not in astrocytes.
“Further, Chen and colleagues observed changes in respiratory chain complexes in neurons but not in astrocytes, indicating that mitochondrial dysfunction based on APOE4 expression is neuron-specific [32].”
From APOE4 Increases Energy Metabolism in APOE-Isogenic iPSC-Derived Neurons (2024) · cites this paper as [32]
APOE4 expression in N2A cells decreased the enzymatic activity of complex IV.
“APOE4 expression in N2A cells decreased the enzymatic activity of complex IV [32].”
From APOE4 Increases Energy Metabolism in APOE-Isogenic iPSC-Derived Neurons (2024) · cites this paper as [32]
Neuronal APOE4 expression reduced the levels of mitochondrial respiratory complex subunits compared to APOE3 neurons.
“Neuronal APOE4 expression reduced the levels of mitochondrial respiratory complex subunits compared to APOE3 neurons [32,33].”
From APOE4 Increases Energy Metabolism in APOE-Isogenic iPSC-Derived Neurons (2024) · cites this paper as [32]
Mitochondrial dysfunction based on APOE4 expression is neuron-specific.
“Further, Chen and colleagues observed changes in respiratory chain complexes in neurons but not in astrocytes, indicating that mitochondrial dysfunction based on APOE4 expression is neuron-specific [32].”
From APOE4 Increases Energy Metabolism in APOE-Isogenic iPSC-Derived Neurons (2024) · cites this paper as [32]
Several studies demonstrated a link between APOE4 and mitochondrial dysfunction, mainly in neurons.
“Several studies demonstrated a link between APOE4 and mitochondrial dysfunction, mainly in neurons9–11; yet the effect of APOE4 on mitochondrial dynamics was less studied.”
From Altered mitochondrial dynamics and function in APOE4-expressing astrocytes (2020) · cites this paper as [11]
ApoE4-induced perturbation to fatty acid homeostasis underlies its negative effect on neuronal bioenergetic and synaptic function, in addition to its direct effect on mitochondria via domain interactions.
“Hence, our data suggest that ApoE4-induced perturbation to FA homeostasis underlies its negative effect on neuronal bioenergetic and synaptic function, besides its direct effect on mitochondria via domain interactions (Chen et al., 2011).”
From ApoE4 Impairs Neuron-Astrocyte Coupling of Fatty Acid Metabolism (2021) · cites this paper as Chen et al., 2011
In neurons, apoE4 is associated with neurotoxicity.
“and neurotoxicity [10, 17–19, 34, 35]”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
ApoE4 reduces the level of respiratory chain subunits in Neuro-2a cells.
“ApoE4 also reduces the level of respiratory chain subunits in Neuro-2a (N2a) cells”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
Expression of apoE4 in mouse neurons, but not astrocytes, selectively decreases the expression of mitochondrial respiratory subunits.
“Expression of apoE4 in mouse neurons, but not astrocytes, selectively decreases the expression of mitochondrial respiratory subunits [18].”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
ApoE4 impairs respiratory function in Neuro-2a cells.
“and impairs respiratory function [18]”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
In neurons, apoE4 is associated with impaired mitochondrial respiration.
“In neurons, apoE4 is associated with impaired mitochondrial respiration”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
Previously, the authors showed that apoE4 decreases levels of cytochrome c oxidase 1 (COX1).
“Previously we showed that apoE4 decreases levels of cytochrome c oxidase 1 (COX1) [18], a mitochondrially encoded subunit that initiates complex IV assembly [82].”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
Previously, the authors reported deficits in single subunits of each of the OXPHOS complexes in apoE4-expressing neuronal cells.
“Previously, we reported deficits in single subunits of each of the OXPHOS complexes in the apoE4-expressing neuronal cells [18].”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
In APOE ε4 carriers, neuronal expression of ApoE4 has a neurotoxic effect, accelerating neurodegeneration and contributing to Alzheimer's disease progression.
“in the case of APOE ε4 carriers, neuronal expression of ApoE4 has a neurotoxic effect [22], accelerating neurodegeneration and contributing to AD progression.”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
ApoE4 assumes a pathological conformation due to an interaction between arginine-61 and glutamate-255 at the N-terminal and C-terminal domains.
“ApoE4 assumes a pathological conformation due to the interaction between arginine −61 and glutamate −255, at the N-terminal and the C-terminal domains, respectively [22].”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
These alterations in N2a cells matched decrease in mitochondrial total respiratory capacity, through lower OCR after CCCP in Seahorse experiments, relative to ApoE3 expression.
“These alterations in N2a cells matched the decrease in mitochondrial total respiratory capacity, through a lower OCR (oxygen consumption rate) after stimulation with CCCP (Carboxyl cyanide m-chlorophenyl hydrazone), a mitochondrial uncoupler, in Seahorse experiments, relatively to ApoE3 expression [22].”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
Characteristic glucose hypometabolism was observed in cognitively normal ApoE4 carriers.
“a characteristic glucose hypometabolism was observed in cognitively normal ApoE4 carriers [22].”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
Mutations in mtDNA are more common in brains of AD patients than in age-matched controls.
“Mutations in mitochondrial DNA (mtDNA) may be involved in mitochondrial dysfunction in AD, since they are more common in the brains of AD patients than in those of age-matched controls [22].”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
ApoE4 is associated with deregulation in mRNA levels of genes encoding for subunits of mitochondrial respiratory complexes, encoded by nuclear and mitochondrial DNA.
“Other studies demonstrated that ApoE4 is associated to a deregulation in mRNA levels of genes encoding for subunits of mitochondrial respiratory complexes (Figure 1), encoded by nuclear and mitochondrial DNA [22]”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
In ApoE4-expressing N2a cells, pharmacological treatment with GIND25 reverted some AD-related mitochondrial alterations, restoring Cx IV levels.
“In this respect, ApoE4-expressing N2a cells pharmacologically treated with GIND25, a small molecule that is able to disrupt ApoE4 domain interaction, reverted some AD-related mitochondrial alterations, namely by restoring Cx IV levels [22].”
From Apoe4 and Alzheimer’s Disease Pathogenesis—Mitochondrial Deregulation and Targeted Therapeutic Strategies (2023) · cites this paper as [22]
In neurons, apoE4 is associated with decreased neurite outgrowth.
“decreased neurite outgrowth”
From Neuronal Apolipoprotein E4 Expression Results in Proteome-Wide Alterations and Compromises Bioenergetic Capacity by Disrupting Mitochondrial Function (2019) · cites this paper as [18]
The section on mitochondrial respiratory complexes in neuronal cells reports lower levels of those complexes in apoE4-expressing neurons, but does not assess neurite outgrowth. Searches for “neurite outgrowth” and “neurite extension and neuronal process growth” found no passage addressing the claimed outcome. Page numbers were not available in our copy. (LLM, conf=0.73)
Experimental — accuracy not yet measuredThe APOE gene product appears to influence mitochondrial function.
“The APOE gene product, interestingly, also appears to influence mitochondrial function [164-167].”
From The Alzheimer’s disease mitochondrial cascade hypothesis: progress and perspectives (2014) · cites this paper as [166]
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- Authors
- Chen, H.-K., Ji, Z.-S., Dodson, S. E., Miranda, R. D., Rosenblum, C. I., Reynolds, I. J., Freedman, S. B., Weisgraber, K. H., Huang, Y., & Mahley, R. W.
- Affiliations
- Gladstone Institutes (US)
- Merck & Co., Inc., Rahway, NJ, USA (United States) (US)
- Corresponding author
- Mahley, Robert W.
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2011-02
- Volume
- 286
- Issue
- 7
- Pages
- 5215-5221
- ISSN
- 0021-9258 (ISSN-L)
- PMC
- PMC3037634
- OpenAlex
- W2021346090
- Cited by
- 209
- References
- 49
- Citations by year
- 2026: 19 · 2025: 18 · 2024: 10 · 2023: 13 · 2022: 8 · 2021: 13 · 2020: 20 · 2019: 15 · 2018: 13 · 2017: 12 · 2016: 13 · 2015: 4 · 2014: 10 · 2013: 12 · 2012: 23
- FWCI
- 8.77
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Biological Chemistry (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
- Keywords
- APOE ε4, Alzheimer's disease, mitochondrial dysfunction, cytochrome c oxidase, APOE isoforms, therapeutic target
- MeSH terms
- Alzheimer Disease, Animals, Electron Transport, Humans, Mitochondria, Neurons, Risk Factors, Protein Structure, Tertiary, Mice, Knockout, Electron Transport Chain Complex Proteins, Cell Line, Tumor, Mice, Apolipoprotein E4
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