Retinoic Acid Receptors Recognize the Mouse Genome through Binding Elements with Diverse Spacing and Topology

Moutier, Emmanuel, Ye, Tao, Choukrallah, Mohamed-Amin, Urban, Sylvia, Osz, Judit, Chatagnon, Amandine, Delacroix, Laurence, Langer, Diana, Rochel, Natacha, Moras, Dino, Benoit, Gerard, Davidson, Irwin·2012·Journal of Biological Chemistry

Cited by (163)

Items 101–163 of 163

  1. Evolution of the Retinoic Acid Signaling Pathway
    Vincent Laudet, Elisabeth Zieger, Michael Schubert · 2015
  2. Biological functional annotation of retinoic acid alpha and beta in mouse liver based on genome-wide binding
    Yuqi He, Jessica Tsuei, Yu‐Jui Yvonne Wan · 2014 · American Journal of Physiology-Gastrointestinal and Liver Physiology
  3. Multi-layered regulation of neuroectoderm differentiation by retinoic acid in a primitive streak-like context
    Luigi Russo, Hanna Lucie Sladitschek, Pierre A. Neveu · 2022 · Stem Cell Reports
  4. Pathogenesis of Anorectal Malformations in Retinoic Acid Receptor Knockout Mice Studied by HREM
    Manuel P. Mark, Marius Teletin, Olivia Wendling, Jean‐Luc Vonesch, Betty Féret, Yann Hérault, Norbert B. Ghyselinck · 2021 · Biomedicines
  5. Liganded retinoic acid X receptor α represses connexin 43 through a potential retinoic acid response element in the promoter region
    Ruoyi Gu, Jun Xu, Yixiang Lin, Jing Zhang, Huijun Wang, Wei Sheng, Duan Ma, Xiaojing Ma, Guoying Huang · 2016 · Pediatric Research
  6. Chronic retinoic acid treatment induces differentiation and changes in the metabolite levels of brown (pre)adipocytes
    Mika Suzuki, Hsuan-Ju Chen, Shozo Tomonaga, Osamu Hashimoto, Teruo Kawada, Tohru Matsui, Masayuki Funaba · 2019 · Cell Biochemistry and Function
  7. DNA recognition by retinoic acid nuclear receptors
    Carole Peluso‐Iltis, Judit Ősz, Natacha Rochel · 2020 · Methods in enzymology on CD-ROM/Methods in enzymology
  8. Non-Coding RNAs in Retinoic Acid as Differentiation and Disease Drivers
    Carlos García‐Padilla, Estefanía Lozano-Velasco, Carmen López‐Sánchez, Virginio García‐Martínez, Amelia Eva Aránega, Diego Franco · 2021 · Non-Coding RNA
  9. The role of RARG in solid tumor progression and therapeutic potential
    Shuyan Guo, Haobo Han, Biao Ding, Wentao Zhang, Long Qin · 2026 · Discover Oncology
  10. Structural insights into retinoic acid receptor activation and selective modulators
    Yining Song, Wenrui Zhao, Xuan Huang, Lai Wei, Jingyi Han, Jiayun Hou, Min Li, Xin Cao · 2025 · Clinical and Translational Discovery
  11. Feedback regulation of retinaldehyde reductase DHRS3 , a critical determinant of retinoic acid homeostasis
    Parisa Varshosaz, Catherine O'Connor, Alexander R. Moise · 2024 · FEBS Letters
  12. How the RAR–RXR Heterodimer Recognizes the Genome
    Sylvia Urban, Tao Ye, Irwin Davidson · 2015 · Wiley eBooks
  13. Anterior insula-associated social novelty recognition: orchestrated regulation by a local retinoic acid cascade and oxytocin signaling
    Sun-Hong Kim, Kyongman An, Ho Namkung, Matthew D. Rannals, James R. Moore, Tyler V. Cash-Padgett, Marina M. Mihaljevic, Sneha Saha, Lina S. Oh, Mari Kondo et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  14. Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq
    Laura V. Glaser, Mara Steiger, Alisa Fuchs, Alena van Bömmel, Edda Einfeldt, Ho-Ryun Chung, Martin Vingron, Sebastiaan H. Meijsing · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  15. The farnesoid X receptor activates transcription independently of RXR at non-canonical response elements
    Suzanne W. van der Veen, Jelmer J. Dijkstra, Ellen C.L. Willemsen, René Houtman, Alexandra Milona, Nikolas Marchet, Maureen Spit, Danielle A.A. Hollman, Fried J. T. Zwartkruis, Michiel Vermeulen et al. · 2024 · Nucleic Acids Research
  16. Transcriptional Regulation of Tal2 Gene by All-trans Retinoic Acid (atRA) in P19 Cells
    Takanobu Kobayashi, Masayo Suzuki, Masayuki Morikawa, Katsuhito Kino, Sei-ichi Tanuma, Hiroshi Miyazawa · 2014 · Biological and Pharmaceutical Bulletin
  17. Vitamin A and the Retinoid System – From Nutrition to Endocrine Disruption
    Helen Håkansson · 2020 · Royal Society of Chemistry eBooks
  18. Retinoic Acid-Mediated Differentiation of Mouse Embryonic Stem Cells to Neuronal Cells
    Sangeeta Dutta, Debosree Pal, Manchanahalli R. Satyanarayana Rao · 2023 · Methods in molecular biology
  19. Retinoid Receptors
    William Bourguet, Dino Moras · 2015 · Wiley eBooks
  20. Retinoic acid modulation of granule cell activity and spatial discrimination in the adult hippocampus
    Yun-Gwon Yeo, Jeongrak Park, Yoonsub Kim, Jong‐Cheol Rah, Chang-Hoon Shin, Seo-Jin Oh, Jin‐Hyeok Jang, Yaebin Lee, Jong Hyuk Yoon, Yong‐Seok Oh · 2024 · Frontiers in Cellular Neuroscience
  21. Multiple roles for retinoid signaling in craniofacial development
    Masahiro Nakamura, Linda J. Sandell · 2024 · Current topics in developmental biology/Current Topics in Developmental Biology
  22. Role of retinoids in biology and toxicology
    Helen Håkansson · 2021 · Reproductive Toxicology
  23. The netrin-1 receptor UNC5C contributes to the homeostasis of undifferentiated spermatogonia in adult mice
    Vilma Barroca, Chrystèle Racine, Laurent Pays, Pierre Fouchet, Mathieu Coureuil, Isabelle Allemand · 2022 · Stem Cell Research
  24. Protein Motifs: Zinc Fingers
    Sandra Meyer, Bruno Kieffer · 2015 · Wiley eBooks
  25. Discovery of genes required for body axis and limb formation by global identification of retinoic acid regulated epigenetic marks
    Marie Berenguer, Karolin F. Meyer, Jun Yin, Gregg Duester · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq
    Glaser, L.V., Steiger, M., Fuchs, A., van Bömmel, A., Einfeldt, E., Chung, H.R., Vingron, M., Meijsing, S.H. · 2021 · MDC Repository (Max-Delbrueck-Center for Molecular Medicine)
  27. Redefining retinoic acid receptor expression in zebrafish embryos using Hybridization Chain Reaction
    Raèden Gray, C. Ben Lovely · 2024 · Differentiation
  28. Retinoic Acid-Regulated Epigenetic Marks Identify Alx1 as a Direct Target Gene Required for Optic Cup Formation
    Marie Berenguer, Gregg Duester · 2025 · Genes
  29. Retinoic acid in health and disease
    Maria Teresa De Angelis, Vincenzo Dattilo, Niccolò Vono, Valentina Lise, Michela Reda, Carmela De Marco, Antonia Rizzuto, Francesco Trapasso, Giuseppe Viglietto, Gianluca Santamaria · 2026 · Signal Transduction and Targeted Therapy
  30. Characterization of regulatory elements in the medaka osterix promoter required for osteoblast expression
    J. Renn, Anita Büttner, E. P. S. Chua, F. S. Tay, Mark Featherstone, Christoph Winkler · 2014 · Journal of Applied Ichthyology
  31. Structural Analysis of Heterodimeric Nuclear Receptors
    Brice Beinsteiner, Dino Moras · 2015 · Springer eBooks
  32. Genetic loss-of-function does not support gain-of-function studies suggesting retinoic acid controls limb bud timing and scaling
    Marie Berenguer, Gregg Duester · 2023 · Frontiers in Cell and Developmental Biology
  33. AP-2α decreases TMZ resistance of recurrent GBM by downregulating MGMT expression and improving DNA damage
    Gui‐Xiang Huang, Mi Ouyang, Kai Xiao, Hao Zhou, Zhe Zhong, Shengwen Long, Zhiwei Li, Yiru Zhang, Limin Li, Shuanglin Xiang et al. · 2024 · Life Sciences
  34. Cell Lineage Choice During Haematopoiesis: A Commemorative Issue in Honor of Professor Antonius Rolink
    Geoffrey Brown, Rhodri Ceredig · 2018 · MDPI eBooks
  35. Control of Gene Expression by Nuclear Retinoic Acid Receptors
    Marilyn Carrier, Cécile Rochette‐Egly · 2015
  36. Retinoid Signaling in the Central Nervous System
    Peter J. A. McCaffery, Wojciech Krężel · 2015 · Wiley eBooks
  37. Pharmacological Retinoic Acid Alters Limb Patterning During Regeneration but Endogenous Retinoic Acid is not Required
    Gregg Duester · 2022 · Regenerative Medicine
  38. Retinoids: Nutritional, Cellular, and Pharmacological Roles of the Vitamin A Derivatives
    Siew Shean Choong, Joel Fulton, Richard David Emes, L. Yon, David M. Heery, Nigel Patrick Mongan · 2015 · Elsevier eBooks
  39. Expression and Regulation of Tal2 during Neuronal Differentiation in P19 Cells
    Takanobu Kobayashi · 2016 · YAKUGAKU ZASSHI
  40. Caspase-8, RIPK1, and RIPK3 Coordinately Regulate Retinoic Acid-Induced Cell Differentiation and Necroptosis
    Masataka Someda, Shunsuke Kuroki, Makoto Tachibana, Shin Yonehara · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  41. Retinoic Acid Plays Critical Roles in the Late Development of the Heart
    Suya Wang · 2017 · KU ScholarWorks (University of Kansas)
  42. Developmental Patterning of the Inner Ear
    Benjamin R. Thiede · 2014
  43. Dissecting Pancreatic β-cell Stress Using Whole Transcriptome Sequencing
    Jennifer S. Stancill · 2017
  44. Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics
    Ana Rosa López-Pérez, Piotr J. Balwierz, Boris Lenhard, Ferenc Müller, Fiona C. Wardle, Isabelle Manfroid, Marianne L. Voz, Bernard Peers · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  45. Metabolically induced neuronal differentiation
    Sandy Maurer · 2022 · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)
  46. Identification of Downstream Effectors of Retinoic Acid Specifying the Zebrafish Pancreas by Integrative Genomics.
    Ana Rosa López-Pérez, Piotr J. Balwierz, Boris Lenhard, Ferenc Müller, Fiona C. Wardle, Isabelle Manfroid, Marianne L. Voz, Bernard Peers · 2021 · Research Square
  47. Rewiring of the epigenome and chromatin architecture by retinoic acid signaling during zebrafish embryonic development
    Marta Moreno-Oñate, Lourdes Gallardo-Fuentes, Pedro Manuel Martínez‐García, Silvia Naranjo, Sandra Jiménez-Gancedo, José Luis Gómez-Skármeta, Juan J. Tena, José M. Santos-Pereira · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  48. Dietary Fat Intake Attenuates Vitamin A Deficiency-Associated Elastic Fiber Remodeling and Lipid Reduction in the Alveolar Niche in Mice
    Lisa-Marie Hoy, Timo Meier, Natascha Mierswa, Melanie Bornemann, Lea Naasner, Heike Bähre, Natali Froese, Christian Riehle, Christian Mühlfeld, Julia Schipke · 2025 · Journal of Nutrition
  49. Genome-wide analysis reveals ligand-dependent allostery in RARα:RXR-mediated transcriptional regulation
    Conner L. Hawkins, William S. Blaner, Elias J. Fernandez · 2026 · Cell Reports
  50. Additional file 6 of Multi-species transcriptome meta-analysis of the response to retinoic acid in vertebrates and comparative analysis of the effects of retinol and retinoic acid on gene expression in LMH cells
    Clemens Falker‐Gieske, Andrea Mott, Franzenburg, Sören, Jens Tetens · 2021 · Figshare
  51. Additional file 9 of Multi-species transcriptome meta-analysis of the response to retinoic acid in vertebrates and comparative analysis of the effects of retinol and retinoic acid on gene expression in LMH cells
    Clemens Falker‐Gieske, Andrea Mott, Franzenburg, Sören, Jens Tetens · 2021 · Figshare
  52. Additional file 3 of Multi-species transcriptome meta-analysis of the response to retinoic acid in vertebrates and comparative analysis of the effects of retinol and retinoic acid on gene expression in LMH cells
    Clemens Falker‐Gieske, Andrea Mott, Franzenburg, Sören, Jens Tetens · 2021 · Figshare
  53. TTNPB Promotes Human Pluripotent Stem Cell‐to‐Neural Stem Cell Transition via Modulation of Chromatin Accessibility and the S‐(5′‐adenosyl)‐L‐homocysteine/Choline Metabolic Network
    Ruilin Du, Yudi Ren, Qiaoqiao Meng, Peng Wei, Ruyu Zhu, Junjie Bao, Ye Yang, Shuo Yan, Chaorong Yue, Xueying Zhu et al. · 2026 · Advanced Science
  54. Evolution of the retinoic acid receptor
    Juliana Gutierrez-Mazariegos · 2014 · theses.fr (ABES)
  55. Roles of retinoic acid signaling in regulating nervous system development in the cephalochordate amphioxus (Branchiostoma lanceolatum)
    Elisabeth Zieger · 2016 · theses.fr (ABES)
  56. Développements en spectrométrie de masse pour l’étude des complexes biologiques
    Nha Thi Nguyen Huynh · 2015 · theses.fr (ABES)
  57. Retinoic acid signaling in chordates : the evolutionary history of a morphogen-dependent signaling
    João E. Carvalho · 2017 · theses.fr (ABES)
  58. TET proteins, New Cofactors for Nuclear Receptors
    Wenyue Guan · 2017 · theses.fr (ABES)
  59. Spectrométrie de masse native et pontage chimique pour l'analyse structurale de complexe protéique
    Christophe Giorgiutti · 2020 · theses.fr (ABES)
  60. Genome-wide chromatin profiling reveals a nonlimiting role for RXR in macrophage-like cells stimulated with multiple nuclear receptor agonists
    Hamidreza Mianesaz, Lóránd Göczi, Dóra Bojcsuk, Safoura Ghalamkari, Lina Fadel, Szilárd Póliska, András Penyige, László Nagy, Gergely Nagy, György Vámosi et al. · 2026 · Journal of Biological Chemistry
  61. Multiplexed Retinoic Acid Signal Reporters for In Vivo and In Vitro Use
    Craig Smith, Bianca Black, Ric B. Broadhurst, Stacey Parbhu, Peter L. Pfeffer · 2026 · genesis
  62. SIRT6/RXRα/retinoic acid-related signaling contributes to intestinal stem cell homeostasis during aging and is modulated by Atractylenolide II
    Yaqian Cao, Chunhui Song, Xiaoqing Sun, Zhenyu Niu, Xueni Zhang, Kerong Qi, Jiazhong Cai, Wenfeng Guo, Gang Chen, Ning Li et al. · 2026 · Chemico-Biological Interactions
  63. Transcriptional and epigenetic program of embryonic stem cell differentiation into neurons by retinoic acid
    Zoltán Simándi, László Nagy · 2014 · University of Debrecen Electronic Archive (University of Debrecen)