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The Need for Guidelines in Publication of Peptide and Protein Identification Data
Open accessAbstract
Over the past few years, the number and size of proteomic datasets composed of mass spectrometry-derived protein identifications reported in the literature have grown dramatically. This is a direct result of the widespread availability of instruments, methods, and easy-to-use software for collecting large amounts of data and for converting the observed peptide and fragment-ion masses to peptide and then protein identities. In particular, the analysis of samples containing large numbers of proteins by multidimensional liquid chromatography (LC/LC)1 coupled on-line with tandem mass spectrometry (MS/MS) is now a common component of many biological projects.
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Cited by
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Rifai, N., Gillette, M. A., & Carr, S. A. (2006) · Nature Biotechnology · doi:10.1038/nbt1235 · Cited by 1,867
Self-citationProtein Analysis by Shotgun/Bottom-up Proteomics
Zhang, Y., Fonslow, B. R., Shan, B., Baek, M.-C., & Yates, J. R. (2013) · Chemical Reviews · doi:10.1021/cr3003533 · Cited by 1,491
Interpretation of Shotgun Proteomic Data
Nesvizhskii, A. I., & Aebersold, R. (2005) · Molecular & Cellular Proteomics · doi:10.1074/mcp.r500012-mcp200 · Cited by 1,025
Self-citationPRIDE: The proteomics identifications database
Martens, L., Hermjakob, H., Jones, P., Adamski, M., Taylor, C., States, D., Gevaert, K., Vandekerckhove, J., & Apweiler, R. (2005) · PROTEOMICS · doi:10.1002/pmic.200401303 · Cited by 594
Carr, S. A., Abbatiello, S. E., Ackermann, B. L., Borchers, C., Domon, B., Deutsch, E. W., Grant, R. P., Hoofnagle, A. N., Hüttenhain, R., Koomen, J. M., et al. (2014) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m113.036095 · Cited by 561
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Metadata
- Authors
- Carr, S., Aebersold, R., Baldwin, M., Burlingame, A., Clauser, K., & Nesvizhskii, A.
- Venue
- Molecular & Cellular Proteomics
- Publisher
- Elsevier BV
- Published
- 2004-06
- Volume
- 3
- Issue
- 6
- Pages
- 531-533
- ISSN
- 1535-9476 (ISSN-L)
- OpenAlex
- W2110603815
- Cited by
- 499
- References
- 0
- FWCI
- 30.26
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Carr, S., Aebersold, R., Baldwin, M., Burlingame, A., Clauser, K., & Nesvizhskii, A. (2004). The Need for Guidelines in Publication of Peptide and Protein Identification Data. Molecular & Cellular Proteomics. https://doi.org/10.1074/mcp.t400006-mcp200
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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
