The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications
Open accessAbstract
Here we present IPSA, an innovative web-based spectrum annotator that visualizes and characterizes peptide tandem mass spectra. A tool for the scientific community, IPSA can visualize peptides collected using a wide variety of experimental and instrumental configurations. Annotated spectra are customizable via a selection of interactive features and can be exported as editable scalable vector graphics to aid in the production of publication-quality figures. Single spectra can be analyzed through provided web forms, whereas data for multiple peptide spectral matches can be uploaded using the Proteomics Standards Initiative file formats mzTab, mzIdentML, and mzML. Alternatively, peptide identifications and spectral data can be provided using generic file formats. IPSA provides supports for annotating spectra collecting using negative-mode ionization and facilitates the characterization of experimental MS/MS performance through the optional export of fragment ion statistics from one to many peptide spectral matches. This resource is made freely accessible at http://interactivepeptidespectralannotator.com, whereas the source code and user guides are available at https://github.com/coongroup/IPSA for private hosting or custom implementations.
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Cox, J., & Mann, M. (2008) · Nature Biotechnology · doi:10.1038/nbt.1511 · Cited by 14,855
Hebert, A. S., Richards, A. L., Bailey, D. J., Ulbrich, A., Coughlin, E. E., Westphall, M. S., & Coon, J. J. (2014) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m113.034769 · Cited by 528
Self-citationImproved Precursor Characterization for Data-Dependent Mass Spectrometry
Hebert, A. S., Thöing, C., Riley, N. M., Kwiecien, N. W., Shiskova, E., Huguet, R., Cardasis, H. L., Kuehn, A., Eliuk, S., Zabrouskov, V., et al. (2018) · Analytical Chemistry · doi:10.1021/acs.analchem.7b04808 · Cited by 67
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Cited by
Bear, A. S., Blanchard, T., Cesare, J., Ford, M. J., Richman, L. P., Xu, C., Baroja, M. L., McCuaig, S., Costeas, C., Gabunia, K., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-24562-2 · Cited by 113
Pervasive translation in Mycobacterium tuberculosis
Smith, C., Canestrari, J. G., Wang, A. J., Champion, M. M., Derbyshire, K. M., Gray, T. A., & Wade, J. T. (2022) · eLife · doi:10.7554/elife.73980 · Cited by 71
Human UFSP1 is an active protease that regulates UFM1 maturation and UFMylation
Millrine, D., Cummings, T., Matthews, S. P., Peter, J. J., Magnussen, H. M., Lange, S. M., Macartney, T., Lamoliatte, F., Knebel, A., & Kulathu, Y. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.111168 · Cited by 71
Tryptophan C-mannosylation is critical for Plasmodium falciparum transmission
Lopaticki, S., McConville, R., John, A., Geoghegan, N., Mohamed, S. D., Verzier, L., Steel, R. W. J., Evelyn, C., O’Neill, M. T., Soler, N. M., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-32076-8 · Cited by 26
Batth, T. S., Simonsen, J. L., Hernández-Rollán, C., Brander, S., Morth, J. P., Johansen, K. S., Nørholm, M. H. H., Hoof, J. B., & Olsen, J. V. (2023) · Nature Communications · doi:10.1038/s41467-023-39875-7 · Cited by 9
Metadata
- Authors
- Brademan, D. R., Riley, N. M., Kwiecien, N. W., & Coon, J. J.
- Venue
- Molecular & Cellular Proteomics
- Publisher
- Elsevier BV
- Published
- 2019-08
- Volume
- 18
- Issue
- 8
- Pages
- S193-S201
- ISSN
- 1535-9476 (ISSN-L)
- OpenAlex
- W2945463821
- Cited by
- 161
- References
- 3
- FWCI
- 5.94
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Brademan, D. R., Riley, N. M., Kwiecien, N. W., & Coon, J. J. (2019). Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications. Molecular & Cellular Proteomics. https://doi.org/10.1074/mcp.tir118.001209
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