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Parametric Empirical Bayes Inference: Theory and Applications
Abstract
This article reviews the state of multiparameter shrinkage estimators with emphasis on the empirical Bayes viewpoint, particularly in the case of parametric prior distributions. Some successful applications of major importance are considered. Recent results concerning estimates of error and confidence intervals are described and illustrated with data.
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“The highly parallel nature of gene expression experiments lends itself to a particular class of statistical methods, called parametric empirical Bayes, that borrow information between genes in a dynamic way (14,15).”
From limma powers differential expression analyses for RNA-sequencing and microarray studies (2015) · cites this paper as [15]
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“Although methodology for the analyses of multi-centre trials has grown substantially with the advent of inexpensive computing and convenient simulation algorithms that permit basic [1], multi-level [2; 3], empirical [4], hierarchical [5] and fully Bayes analyses [6], as well as stratiLcation methods [7], methodology f…”
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“Also the superiority of this particular EBE in terms of the mean squared error (when averaged across at least four subjects) has been shown (Casella, 1985; Morris, 1983).”
BackgroundEMPIRICAL BAYES METHODS: A TOOL FOR EXPLORATORY ANALYSIS
Braun, H. I. (1988) · ETS Research Report Series · doi:10.1002/j.2330-8516.1988.tb00281.x · Cited by 26
“Some discussion of robustness appears in Morris (1983) and the accompanying discussion.”
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“Approaches that exploit the twostage nature of clustered data improve estimation when the specified two-stage model holds (Morris 1983), which makes empirical Bayesian or fully Bayesian approaches more attractive than simply deriving the MLE in the standard way (i.e., θ mle k = y k ).”
MethodBayesian input in Stein estimation and a new minimax empirical Bayes estimator
Berger, J. O., & Berliner, L. M. (1984) · Journal of Econometrics · doi:10.1016/0304-4076(84)90039-3 · Cited by 26
On Analytic Empirical Bayes Estimation of Failure Rates
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“This is the density of θ if, independently for i = 1, . . . , k, θi|A∼N(0,A) and A∼Unif[0,∞), as seen from ∫ ∞ 0 e−1/2‖θ‖ 2/A dA Ak/2 ∝ ‖θ‖2−k.(30) This prior with c = 1, that is, A ∼ Unif[0,∞), is strongly suggested in the equal variance case by the fact that the James–Stein shrinkage constant B̂ = k−2 S+ is precisel…”
BackgroundInfluentialBenchmarked empirical Bayes methods in multiplicative area-level models with risk evaluation
Ghosh, M., Kubokawa, T., & Kawakubo, Y. (2015) · Biometrika · doi:10.1093/biomet/asv010 · Cited by 25
“…of τ 2, there are several methods proposed in the literature, which include the iterative method of moments estimator by Fay and Herriot (1979) and Morris (1983), the Prasad-Rao (1990) method of moment estimator, the maximum likelihood (ML) and the restricted maximum likelihood (REML)…”
MethodShrinkage Estimators in Online Experiments
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“Efron says the derivation is from Morris [25] where the variance expression appears as equation (4.1).”
BackgroundInfluentialThomas, D. C., Pitkäniemi, J. M., Langholz, B. M., Tuomilehto‐Wolf, E., Tuomilehto, J., & DiMe Study Group (1995) · Genetic Epidemiology · doi:10.1002/gepi.1370120503 · Cited by 25
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Adult Literacy Development and Economic Growth
Reder, S. (2010) · PsycEXTRA Dataset · doi:10.1037/e529892011-001 · Cited by 25
“These are model-based empirical Bayes estimates (Morris, 1983) of individual growth curve parameters.”
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“Morris CN. Parametric empirical Bayes inference: theory and applications.”
MethodEMPIRICAL BAYES ESTIMATION FOR THE MEANS OF THE SELECTED POPULATIONS
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Mortality Effects and Choice Across Private Health Insurance Plans
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“These estimates are given by (recentered) OLS coefficients, and we estimate σ2w, σ2u , and σ2e by a conventional random effects procedure (Morris, 1983).”
MethodPardhan-Ali, A., Berke, O., Wilson, J. B., Edge, V. L., Furgal, C. M., Reid‐Smith, R. J., dos Santos, M. C., & McEwen, S. A. (2012) · International Journal of Health Geographics · doi:10.1186/1476-072x-11-17 · Cited by 24
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BackgroundMethodPowell, E. J., McDowell, S., O’Brien, R., & Oksasoglu, J. (2020) · Constitutional Political Economy · doi:10.1007/s10602-019-09298-y · Cited by 27
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“To encode the nc categorical variables as numerical we use either the James-Stein encoder [22], or the target additive encoding [23], or the CatBoost approach [24].”
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Johnson, M., Lipscomb, S., & Gill, B. (2014) · Journal of Research on Educational Effectiveness · doi:10.1080/19345747.2014.967898 · Cited by 23
“We adjust for measurement error in the teacher VAM estimates through an Empirical Bayes (shrinkage) procedure (Morris 1983).”
MethodJeong, H. (2015) · Biometrics & Biostatistics International Journal · doi:10.15406/bbij.2015.02.00020 · Cited by 23
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Christensen, A. L., Jacobs, E., Maheshwari, K. K., Xing, F., Zhao, X., Simon, S. E., Domino, K. B., Posner, K. L., Stewart, A. F., Sanford, J. A., et al. (2020) · Anesthesia & Analgesia · doi:10.1213/ane.0000000000005287 · Cited by 23
Robust hierarchical Bayes estimation of exchangeable means
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Comparisons of Alternative Predictors Under the Balanced One-Way Random Model
Peixoto, J. L., & Harville, D. A. (1986) · Journal of the American Statistical Association · doi:10.1080/01621459.1986.10478287 · Cited by 23
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“The Bayesian estimation method is described in Section 4 and differs from standard empirical Bayes procedures in that separate data are used to estimate the prior distributions [see Morris (1983) and references therein].”
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“In particular, this study uses the restricted maximum likelihood technique (Raudenbush 2009), a method of random effects, that has its origins in Morris (1983).”
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ResultCasetti, E. (1991) · Environment and Planning A Economy and Space · doi:10.1068/a231045 · Cited by 22
“Some phases of estimation and inference for cases under (c) through (e) are addressed in the literature on random coefficients (Cooley and Prescott, 1976; Fomby et al, 1984; Swamy, 1971); on varying parameters (Judge et al, 1985; Maddala, 1977; Raj and Ullah, 1981); on Bayesian linear models (Lindley and Smith, 1972;…”
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“i(x,^ - 1] n <p{{xi - 9i)/pf)dT{d), (16)”
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“There is a remarkable amount of variation across auctioneers with 13 See, among others, Chandra, Finkelstein, Sacarny, and Syverson (2013); Jacob and Lefgren (2005); and Morris (1983).”
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“Hierarchical co-demographic modeling for sister taxon pairs is available in the software programs msBayes (Hickerson et al. 2007, 2014; Huang et al. 2011) and dpp-msbayes (Oaks 2014), which use an approximate Bayesian computation (ABC) inferential framework.”
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“A noninformative prior distribution is considered as one of the reasonable choices of objective prior distribution because noninformative distributions make the data speak for themselves so that posterior inferences are unaffected by external information (Berger, 2006; Gelman, 2002; Gelman et al., 2004; Goldstein, 200…”
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“We used an empirical Bayes procedure as outlined in Morris (1983) to account for imprecise estimates.”
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“This is in line with Empirical Bayes approaches (Casella, 1985; Morris, 1983; Robbins, 1955) that estimate prior distributions from the data.”
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“Note that the consistent estimator of 𝜈 from the marginal distribution of ̂𝜃 is ̂𝜈 + = max(0 , ̂𝜃 2 − ̂𝜎 2 𝜃 ) , where ̂𝜎 2 𝜃 is an estimate of 𝜎 2 𝜃 (Morris, 1983).”
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Quantile Encoder: Tackling High Cardinality Categorical Features in Regression Problems
Mougan, C., Masip, D., Nin, J., & Pujol, O. (2021) · Lecture notes in computer science · doi:10.1007/978-3-030-85529-1_14 · Cited by 20
“This set of encoding techniques includes ordinal encoding, James-Stein Encoder [16,28,8], and several state of the art target encodings with different regularization values such as catboost [18], classical target encoder [15,27] and M-estimate target encoding [4] and generalized linear mixed models encoder [9,27].”
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Mishra, N., Zhang, H., Lafferty, J., & Hoffmann, H. (2015) · ACM SIGARCH Computer Architecture News · doi:10.1145/2786763.2694373 · Cited by 20
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Empirical Bayes Estimation of the Reliability of Nuclear-Power-Plant Emergency Diesel Generators
Martz, H. F., Kvam, P. H., & Abramson, L. R. (1996) · Technometrics · doi:10.1080/00401706.1996.10484412 · Cited by 20
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On The Problem of Finding The Largest Normal Mean Under Heteroscedasticity
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Liran Einav, B., Finkelstein, A. N., & Mahoney, N. (2022) · National Bureau of Economic Research · doi:10.3386/w30228 · Cited by 20
“To perform shrinkage we follow the procedure described in Morris (1983).”
Qiu, J., & Hwang, J. T. G. (2007) · Biometrics · doi:10.1111/j.1541-0420.2007.00770.x · Cited by 19
“See Morris (1983) and He (1992), which deal with θ i ’s, not θ ( i ) ’s. Morris’s confidence intervals are narrower than the standard intervals only on the average of all the N intervals whereas He’s approach results in a narrower interval for every θ i .”
BackgroundAssociation Between Race and Case Fatality Rate in Hospitalizations for Sepsis
Sandoval, E., & Chang, D. (2015) · Journal of Racial and Ethnic Health Disparities · doi:10.1007/s40615-015-0181-0 · Cited by 20
Jiang, J., & Nguyen, T. D. (2021) · Springer series in statistics · doi:10.1007/978-1-0716-1282-8_1 · Cited by 20
Stambaugh, R. F. (2011) · Quarterly Journal of Finance · doi:10.1142/s2010139211000158 · Cited by 19
Admissible estimation, Dirichlet principles and recurrence of birth-death chains on ℤ p +
Johnstone, I. M. (1986) · Probability Theory and Related Fields · doi:10.1007/bf00332311 · Cited by 19
Confidence sets and the stein effect
Casella, G., & Hwang, J. T. (1986) · Communication in Statistics- Theory and Methods · doi:10.1080/03610928608829234 · Cited by 19
Bayesian nonparametric survival analysis for grouped data
Johnson, W. O., & Christensen, R. (1986) · Canadian Journal of Statistics · doi:10.2307/3315188 · Cited by 19
Bayesian Regression and the Expansion Method
Casetti, E. (1992) · Geographical Analysis · doi:10.1111/j.1538-4632.1992.tb00252.x · Cited by 19
Estimation of a Stationary Markov Chain
Billard, L., & Meshkani, M. R. (1995) · Journal of the American Statistical Association · doi:10.1080/01621459.1995.10476514 · Cited by 19
Determining the Accuracy of Bayesian Empirical Bayes Estimates in the Familiar Exponential Families
Morris, C. N. (1988) · Springer eBooks · doi:10.1007/978-1-4613-8768-8_26 · Cited by 19
Shrinkage and Orthogonal Decomposition
Blaker, H. (1999) · Scandinavian Journal of Statistics · doi:10.1111/1467-9469.00133 · Cited by 19
Ranking Firms Using Revealed Preference
Sorkin, I. (2017) · National Bureau of Economic Research · doi:10.3386/w23938 · Cited by 19
Weisburst, E. (2022) · The Journal of Human Resources · doi:10.3368/jhr.0720-11019r2 · Cited by 18
Metadata
- Authors
- Morris, C. N.
- Affiliations
- The University of Texas at Austin (US)
- Corresponding author
- Morris, Carl N.
- Venue
- Journal of the American Statistical Association
- Publisher
- Informa UK Limited
- Published
- 1983-03
- Volume
- 78
- Issue
- 381
- Pages
- 47-55
- ISSN
- 0162-1459 (ISSN-L)
- 1537-274X
- OpenAlex
- W1983607152
- Cited by
- 1,448
- References
- 36
- Citations by year
- 2026: 32 · 2025: 30 · 2024: 52 · 2023: 42 · 2022: 40 · 2021: 51 · 2020: 62 · 2019: 44 · 2018: 49 · 2017: 43 · 2016: 54 · 2015: 63 · 2014: 66 · 2013: 49 · 2012: 48
- FWCI
- 24.44
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Journal of the American Statistical Association (publishedVersion)
- Topics
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods and Bayesian Inference
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods and Inference
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Distribution Estimation and Applications
- Keywords
- parametric empirical Bayes, confidence intervals, shrinkage estimation
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