Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia.
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All searches found the same single tree, congruent with the slightly less resolved tree in Gatesy et al. and identical to Gatesy and Amato except for resolving one trichotomy near the tip in Crocodylus.
“All searches found the same single tree (Figure 1), congruent with the slightly less resolved tree in Gatesy et al. [2], and identical to that in the more recent Gatesy and Amato [45] analysis with the exception of our tree resolving one trichotomy near the tip in Crocodylus.”
From Insights into the Ecology and Evolutionary Success of Crocodilians Revealed through Bite-Force and Tooth-Pressure Experimentation (2012) · cites this paper as [2]
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Philippe, H., Delsuc, F., Brinkmann, H., & Lartillot, N. (2005) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev.ecolsys.35.112202.130205 · Cited by 306 · see citing works
Erickson, G. M., Gignac, P. M., Steppan, S. J., Lappin, A. K., Vliet, K. A., Brueggen, J. D., Inouye, B. D., Kledzik, D., & Webb, G. J. W. (2012) · PLoS ONE · doi:10.1371/journal.pone.0031781 · Cited by 218 · see citing works
“For our study, an aligned DNA sequence matrix was obtained from John Gatesy (University of California, Santa Barbara), consisting of published sequences for the nuclear genes RAG-1, BDNF, ATP7A, LDHa, c-myc, c-mos, DMP1, ODC, and 18S/ 28S rflp, and portions of the mitochondrial genes nd6, cyt b, the intervening glutam…”
BackgroundMethodResultInfluentialFabre, P. H., Rodrigues, A., & Douzery, E. J. P. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.08.004 · Cited by 211 · see citing works
Hekkala, E., Gatesy, J., Narechania, A., Meredith, R., Russello, M., Aardema, M. L., Jensen, E., Montanari, S., Brochu, C., Norell, M., et al. (2021) · Communications Biology · doi:10.1038/s42003-021-02017-0 · Cited by 39
Self-citation
- Authors
- Gatesy, J., Baker, R., & Hayashi, C.
- Affiliations
- University of California, Riverside (US)
- Venue
- Systematic Biology
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-04
- Volume
- 53
- Issue
- 2
- Pages
- 342-355
- ISSN
- 1063-5157 (ISSN-L)
- OpenAlex
- W1987521743
- Cited by
- 110
- References
- 0
- Citations by year
- 2025: 1 · 2023: 1 · 2022: 2 · 2021: 3 · 2020: 2 · 2019: 4 · 2018: 2 · 2017: 1 · 2016: 4 · 2015: 2 · 2014: 4 · 2013: 5 · 2012: 5
- FWCI
- 3.67
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Systematic Biology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Paleontology and Evolutionary Biology
- Keywords
- supertree methods, supermatrices, crocodilians, phylogenetic inference, phylogenetic incongruence, phylogenetic conflict
- MeSH terms
- Alligators and Crocodiles, Animals, Classification, Data Interpretation, Statistical, Phylogeny, Research Design, Meta-Analysis as Topic
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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