The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
SINEs of a Nearly Perfect Character
Abstract
Mobile elements have been recognized as powerful tools for phylogenetic and population-level analyses. However, issues regarding potential sources of homoplasy and other misleading events have been raised. We have collected available data for all phylogenetic and population level studies of primates utilizing Alu insertion data and examined them for potentially homoplasious and other misleading events. Very low levels of each potential confounding factor in a phylogenetic or population analysis (i.e., lineage sorting, parallel insertions, and precise excision) were found. Although taxa known to be subject to high levels of these types of events may indeed be subject to problems when using SINE analysis, we propose that most taxa will respond as the order Primates has--by the resolution of several long-standing problems observed using sequence-based methods.
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Cites
Goodman, M., Porter, C. A., Czelusniak, J., Page, S. L., Schneider, H., Shoshani, J., Gunnell, G., & Groves, C. P. (1998) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1998.0495 · Cited by 743
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
Shimamura, M., Yasue, H., Ohshima, K., Abe, H., Kato, H., Kishiro, T., Goto, M., Munechika, I., & Okada, N. (1997) · Nature · doi:10.1038/41759 · Cited by 399 · cited 1×
“, 1993, 1996,1998; Ryan and Dugaiczyk, 1989), the SINE method of phylogenetic reconstruction began receiving increased attention when Norihiro Okada and colleagues pub lished their investigation into the relationship between whales and artiodactyls (Nikaido et al., 1999; Shimamura et al., 1997).”
MethodPrimate jumping genes elucidate strepsirrhine phylogeny.
Roos, C., Schmitz, J., & Zischler, H. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403852101 · Cited by 262
Cited by
Whole-genome analyses resolve early branches in the tree of life of modern birds
Jarvis, E. D., Mirarab, S., Aberer, A. J., Li, B., Houde, P., Li, C., Ho, S. Y. W., Faircloth, B. C., Nabholz, B., Howard, J. T., et al. (2014) · Science · doi:10.1126/science.1253451 · Cited by 1,901
Self-citationThe Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
Suh, A., Smeds, L., & Ellegren, H. (2015) · PLOS Biology · doi:10.1371/journal.pbio.1002224 · Cited by 277
Cloutier, A., Sackton, T. B., Grayson, P., Clamp, M., Baker, A. J., & Edwards, S. V. (2019) · Systematic Biology · doi:10.1093/sysbio/syz019 · Cited by 124
Genomic support for a moa-tinamou clade and adaptive morphological convergence in flightless ratites
Baker, A. J., Haddrath, O., McPherson, J. D., & Cloutier, A. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu153 · Cited by 108
Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes)
Kriegs, J., Matzke, A., Churakov, G., Kuritzin, A., Mayr, G., Brosius, J., & Schmitz, J. (2007) · BMC Evolutionary Biology · doi:10.1186/1471-2148-7-190 · Cited by 82
Metadata
- Authors
- Ray, D. A., Xing, J., Salem, A.-H., & Batzer, M. A.
- Venue
- Systematic Biology
- Publisher
- Oxford University Press (OUP)
- Published
- 2006-12-01
- Volume
- 55
- Issue
- 6
- Pages
- 928-935
- ISSN
- 1063-5157 (ISSN-L)
- 1076-836X
- OpenAlex
- W2126076139
- Cited by
- 189
- References
- 3
- FWCI
- 14.33
- Type
- journal article
- Language
- en
- Open access
- closed
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