The DOI matches its Crossref record; 77 of the 80 references it cites were found in a registry or an index.
Current progress of immunoinformatics approach harnessed for cellular- and antibody-dependent vaccine design
Open accessAbstract
Immunoinformatics plays a pivotal role in vaccine design, immunodiagnostic development, and antibody production. In the past, antibody design and vaccine development depended exclusively on immunological experiments which are relatively expensive and time-consuming. However, recent advances in the field of immunological bioinformatics have provided feasible tools which can be used to lessen the time and cost required for vaccine and antibody development. This approach allows the selection of immunogenic regions from the pathogen genomes. The ideal regions could be developed as potential vaccine candidates to trigger protective immune responses in the hosts. At present, epitope-based vaccines are attractive concepts which have been successfully trailed to develop vaccines which target rapidly mutating pathogens. In this article, we provide an overview of the current progress of immunoinformatics and their applications in the vaccine design, immune system modeling and therapeutics.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“From a therapeutic perspective, knowledge of the epitope can be used for rational design in targeting an immunogenic region for vaccine development [162].”
From Computational approaches to therapeutic antibody design: established methods and emerging trends (2020) · cites this paper as [162]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
1 retracted
Zeinalzadeh, N., Salmanian, A. H., Ahangari, G., Sadeghi, M., Amani, J., Bathaie, S. Z., & Jafari, M. (2013) · Biotechnology and Applied Biochemistry · doi:10.1002/bab.1196 · Cited by 13
RetractedSYFPEITHI: database for MHC ligands and peptide motifs
Rammensee, H., Bachmann, J., Emmerich, N., Bachor, O. A., & Stevanović, S. (1999) · Immunogenetics · doi:10.1007/s002510050595 · Cited by 2,316
Prediction of continuous B‐cell epitopes in an antigen using recurrent neural network
Saha, S., & Raghava, G. P. S. (2006) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.21078 · Cited by 1,769
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
Jespersen, M. C., Peters, B., Nielsen, M., & Marcatili, P. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx346 · Cited by 1,739
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Ponomarenko, J. V., Bui, H., Li, W., Fusseder, N., Bourne, P. E., Sette, A., & Peters, B. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-514 · Cited by 1,738
Parker, K. C., Bednarek, M. A., & Coligan, J. E. (1994) · The Journal of Immunology · doi:10.4049/jimmunol.152.1.163 · Cited by 1,368
The immune epitope database (IEDB) 3.0
Vita, R., Overton, J. A., Greenbaum, J. A., Ponomarenko, J., Clark, J., Cantrell, J. R., Wheeler, D., Gabbard, J., Hix, D., Sette, A., et al. (2014) · Nucleic Acids Res. · doi:10.1093/nar/gku938 · Cited by 1,086
Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations
Nielsen, M., Lundegaard, C., Worning, P., Lauemøller, S. L., Lamberth, K., Buus, S., Brunak, S., & Lund, O. (2003) · Protein Science · doi:10.1110/ps.0239403 · Cited by 1,075
Edward Jenner and the History of Smallpox and Vaccination
Riedel, S. F. (2005) · Baylor University Medical Center Proceedings · doi:10.1080/08998280.2005.11928028 · Cited by 965
ProPred: prediction of HLA-DR binding sites
Singh, H., & Raghava, G. P. S. (2001) · Bioinformatics · doi:10.1093/bioinformatics/17.12.1236 · Cited by 844
Research works printed but not linked: 5
- 10.1007/978-1-4939-1115-8 · DOI
- 10.1002/jmr.v21:4 · DOI
- 10.1002/bab.2014.61.issue-5 · DOI
- Saha SaR GPS. editor BcePred: Prediction of continuous B-cell epitopes in antigenic sequences using physico-chemical properties2004. Catania Sicily, Italy: Artificial Immune Systems: Third international conference, ICARIS; 2004 Sep 13–16.
- 10.1002/prot.v69:2 · DOI
Cited by
Sorted by citations
Items 101–122 of 122
Shafaati, M., Jajan, L. H.-G., Ebadi, M., Zarghami, V., & Ghorbani, M. (2024) · World s Poultry Science Journal · doi:10.1080/00439339.2024.2308227 · Cited by 1
“The use of bioinformatics tools in reverse vaccinology aids in designing and manufacturing vaccinations that produce epitope-specific neutralising antibodies (Kazi et al .”
BackgroundThakor, J. M., Panchal, U. V., Patel, D., Filipek, S., Orzeł, U., Paulmurugan, R., Hanack, K., Liepmann, D., Renugopalakrishnan, V., Joshi, C. G., et al. (2025) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2025.2487196 · Cited by 1
“Over recent years, the fusion of bioinformatics and immune-informatics methods have played a pivotal role throughout all phases of vaccine research from preclinical studies to clinical trials and post-vaccine assessment (Kazi et al., 2018).”
Immunoinformatics-Based Vaccine Designing
Kothiyal, P., Pant, K., & Singh, P. (2025) · Advances in Science, Technology & Innovation/Advances in science, technology & innovation · doi:10.1007/978-3-031-80973-6_17 · Cited by 1
In Search of the Vaccine Against Chagas Disease: A Tedious Road of More Than 100 Years
Doctorado en Ciencias Biomédicas, X., Domínguez-Guillén, A., López‐Domínguez, J., LADISER, I. Y. B. M., Ochoa‐Martínez, P., LADISER, I. Y. B. M., López‐Monteon, A., LADISER, I. Y. B. M., Ramos-Ligonio, Á., & LADISER, I. Y. B. M. (2021) · Austin Journal of Infectious Diseases · doi:10.26420/austinjinfectdis.2021.1049
“com CoV-2, wherefrom genome sequencing and in silico analysis using computational methods for the prediction and design of vaccines [70], a large number of vaccine candidates was generated, developing (because of the critical situation), a vaccine approved and applied in less than 1 year for this virus [71], demonstra…”
MethodElhag, M., Abdelmoneim, A. H., Sati, A. O. M., Saadaldin, M. M., Ahmad, N. M., & Hassan, M. A. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.27.474190
“Peptide vaccines require less time and cost to be produced, can stimulate effective immune response and can target rapidly mutating pathogens [20, 21].”
BackgroundSeputra, M. W., Susiati, H., & Raras, T. Y. M. (2023) · The Journal of Experimental Life Sciences · doi:10.21776/ub.jels.2022.012.03.08
Soliman, M. M., Sheikhani, D., Nassar, J., Elsabbagh, S. A., & Ibrahim, T. M. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.26.559565
“Bioinformatics techniques can help scientists in a variety of biological domains anticipate possibly immunoprotective epitopes in design candidate vaccines, the design of immunodiagnostic modalities, and the production of antibodies (Kazi, Chuah et al. 2018, Shafaghi, Bahadori et al. 2023).”
BackgroundAsadi, M., Ghaffari, A. D., & Mohammadhasani, F. (2024) · Current Research in Translational Medicine · doi:10.1016/j.retram.2024.103475
Caballero, P. S., Pereira, I. L., de Freitas, S. B., Neis, A., Cardoso, T. L., Wozeak, D. R., Neto, A. C. P. S., Pinto, L. D. S., & Hartwig, D. D. (2025) · Brazilian Journal of Microbiology · doi:10.1007/s42770-025-01666-1
“These non-antibiotic strategies offer a promising alternative [ 27].”
Gholami, S., Abadi, A. J. E., Ghiabi, S., Siamian, D., Abdollahi, H., Famili, F., Yousefi, A., & Majidiani, H. (2025) · Journal of Parasitology Research · doi:10.1155/japr/9909421
“Analyzing pathogen protein epitopes elucidates virulence and immune evasion mechanisms, guiding epitope-based vaccine design via reverse vaccinology [43, 44].”
Foroutan, M., Elsheikha, H. M., KarimiPourSaryazdi, A., Ghaffari, A. D., Ghaffarifar, F., & Majidiani, H. (2025) · EXCLI journal · doi:10.17179/excli2025-8304
Abedi, A., & Ghaffari, A. D. (2025) · Interdisciplinary Perspectives on Infectious Diseases · doi:10.1155/ipid/4426082
MIC13 of Toxoplasma gondii : Potential Gene for Vaccine Candidate—An In Silico Approach
Mohammadi, M. K., & Ghaffari, A. D. (2025) · Journal of Parasitology Research · doi:10.1155/japr/3114690
Hakimian, M., Doosti, A., & Sharifzadeh, A. (2024) · Figshare · doi:10.6084/m9.figshare.25754952
Foroutan, M., Karimzadeh‐Soureshjani, E., & Ghaffarifar, F. (2026) · Veterinary Medicine and Science · doi:10.1002/vms3.70807
“Since these methods offer several advantages, including time, effort, and cost efficiency, they are essential as a pre-analysis step before undertaking wet laboratory evaluations (Flower et al. 2010 ; Foroutan et al. 2025b ; Kazi et al. 2018 ; Romano et al. 2011 ).”
InfluentialZhao, W., Hu, K., Ding, F., Yao, X., Xu, L., Liu, B., Guan, S., Chang, Y., Wang, Q., Zhao, Y., et al. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2026.152429
Immunoinformatics analysis of TgROP5: A step toward Toxoplasma gondii vaccine development
Foroutan, M., Saeedi‐Boroujeni, A., Karimzadeh‐Soureshjani, E., Ghaffarifar, F., KarimiPourSaryazdi, A., & Sadooni, R. (2026) · In Silico Research in Biomedicine · doi:10.1016/j.insi.2026.100409
Niknam, M., Zohrabzadeh, M., Hahashempour, A., Jahromi, A. H., Karbalaee-Alinazari, M.-M., & Hajizade, M. S. (2026) · Bioinformatics and Biology Insights · doi:10.1177/11779322261489936
Metadata
- Authors
- Kazi, A., Chuah, C., Majeed, A. B. A., Leow, C. H., Lim, B. H., & Leow, C. Y.
- Affiliations
- Universiti Sains Malaysia (MY)
- Universiti Teknologi MARA System (MY)
- ,
- Venue
- Pathogens and Global Health
- Publisher
- Informa UK Limited
- Published
- 2018-03-12
- Volume
- 112
- Issue
- 3
- Pages
- 123-131
- ISSN
- 2047-7724 (ISSN-L)
- 2047-7732
- PMC
- PMC6056828
- OpenAlex
- W2789811841
- Cited by
- 122
- References
- 80
- Citations by year
- 2026: 6 · 2025: 19 · 2024: 12 · 2023: 17 · 2022: 9 · 2021: 28 · 2020: 22 · 2019: 6 · 2018: 3
- FWCI
- 5.25
- Type
- journal article
- Language
- en
- Update notices
- correction (2018-04-27)
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Pathogens and Global Health (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Higher Institutions Centre of Excellence Program (311/CIPPM/4401005)
- Fundamental Research Grant Scheme (203/CIPPM/6171199)
- The Malaysian Ministry of Higher Education of the Higher Institutions Centre of Excellence Program (311/CIPPM/4401005)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › vaccines and immunoinformatics approaches
- Life Sciences › Immunology and Microbiology › Immunology › Immunotherapy and Immune Responses
- Physical Sciences › Computer Science › Artificial Intelligence › Artificial Immune Systems Applications
- Keywords
- immunoinformatics, vaccine design, antibody design, epitope-based vaccine, immune system modeling, B-cell epitopes
- MeSH terms
- Animals, Epitopes, Humans, Immunity, Cellular, Vaccines, Computational Biology, Drug Discovery, Immunity, Humoral
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review