The transcriptional cycle of HIV-1 in real-time and live cells

Cited by (191)

Items 101–191 of 191

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2. RNA transport from transcription to localized translation: a single molecule perspective
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3. Nuclear organization and transcriptional dynamics in Dictyostelium
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4. Complexity of RNA polymerase II elongation dynamics
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5. Nuclear functions in space and time: Gene expression in a dynamic, constrained environment
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6. Coactivators and general transcription factors have two distinct dynamic populations dependent on transcription
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7. Intragenic transcriptional cis-activation of the human immunodeficiency virus 1 does not result in allele-specific inhibition of the endogenous gene
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8. Making ends meet: coordination between RNA 3′‐end processing and transcription initiation
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9. ZBTB2 represses HIV-1 transcription and is regulated by HIV-1 Vpr and cellular DNA damage responses
   James W. Bruce, Megan Bracken, Edward L. Evans, Nathan M. Sherer, Paul Ahlquist · 2021 · PLoS Pathogens
10. The predictors of unsuppressed viremia among PLHIV: a cross-sectional study in Ghana
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11. Subcellular localization of the interaction between the human immunodeficiency virus transactivator Tat and the nucleosome assembly protein 1
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12. Considering the kinetics of mRNA synthesis in the analysis of the genome and epigenome reveals determinants of co-transcriptional splicing
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13. MLV requires Tap/NXF1-dependent pathway to export its unspliced RNA to the cytoplasm and to express both spliced and unspliced RNAs
    Pessel-Vivares, Lucie, Ferrer, Mireia, Lainé, Sébastien, Mougel, Marylène · 2014 · Retrovirology
14. The dynamic lifecycle of mRNA in the nucleus
    Rakefet Ben-Yishay, Yaron Shav‐Tal · 2019 · Current Opinion in Cell Biology
15. Transcription and splicing
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16. Transcriptional Stochasticity as a Key Aspect of HIV-1 Latency
    Alexia Damour, Věra Slaninová, Ovidiu Radulescu, Édouard Bertrand, Eugenia I. Basyuk · 2023 · Viruses
17. Nuclear positional control of HIV transcription in 4D
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18. Evidence for intron length conservation in a set of mammalian genes associated with embryonic development
    Cathal Seoighe, Paul K Korir · 2011 · BMC Bioinformatics
19. Nuclear Physics: Quantitative Single-Cell Approaches to Nuclear Organization and Gene Expression
    Timothée Lionnet, Bin Wu, David Grünwald, Robert H. Singer, Daniel R. Larson · 2010 · Cold Spring Harbor Symposia on Quantitative Biology
20. The dynamic pathway of nuclear RNA in eukaryotes
    Jonathan Sheinberger, Yaron Shav‐Tal · 2013 · Nucleus
21. The in vivo dynamics of TCERG1, a factor that couples transcriptional elongation with splicing
    Noemí Sánchez-Hernández, Stéphanie Boireau, Ute Schmidt, Juan Pablo Muñoz-Cobo, Cristina Hernández-Munaín, Édouard Bertrand, Carlos Suñé · 2016 · RNA
22. Imaging dynamic interactions between spliceosomal proteins and pre-mRNA in living cells
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23. Spt6 levels are modulated by PAAF1 and proteasome to regulate the HIV-1 LTR
    Mirai Nakamura, Poornima Basavarajaiah, Emilie Rousset, Cyprien Beraud, Daniel Latreille, Imène Sarah Hénaoui, Irina Lassot, Bernard P. Mari, Rosemary E. Kiernan · 2012 · Retrovirology
24. A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness
    T. J. Sego, Josua O. Aponte-Serrano, Juliano F. Gianlupi, Samuel R. Heaps, Kira Breithaupt, Lutz Brusch, Jessica R. Crawshaw, James M. Osborne, Ellen M. Quardokus, Richard Karl Plemper et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
25. Imaging Organization of RNA Processing within the Nucleus
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26. Visual detection of Flavivirus RNA in living cells
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27. Dynamic Post-Transcriptional Regulation of HIV-1 Gene Expression
    Anna Kula, Alessandro Marcello · 2012 · Biology
28. HCV RNA traffic and association with NS5A in living cells
    Guillaume N. Fiches, Nicholas S. Eyre, Amanda L. Aloia, Kylie H. Van der Hoek, Brigid Betz‐Stablein, Fabio Luciani, Abha Chopra, Michael R. Beard · 2016 · Virology
29. Chromatin Folding: From Linear Chromosomes to the 4D Nucleus
    Thierry Cheutin, Frédéric Bantignies, Benjamin Leblanc, Giacomo Cavalli · 2010 · Cold Spring Harbor Symposia on Quantitative Biology
30. Real-time single-cell characterization of the eukaryotic transcription cycle reveals correlations between RNA initiation, elongation, and cleavage
    Jonathan Liu, Donald Hansen, Elizabeth Eck, Yang Joon Kim, Meghan A. Turner, Simón Álamos, Hernán G. García · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
31. Studying Retroviral Life Cycles Using Visible Viruses and Live Cell Imaging
    Jorge F. Guerrero, Sydney L. Lesko, Edward L. Evans, Nathan M. Sherer · 2024 · Annual Review of Virology
32. Single-site transcription rates through fitting of ensemble-averaged data from fluorescence recovery after photobleaching: A fat-tailed distribution
    Liat Rosenfeld, Eldad Kepten, Sharon Yunger, Yaron Shav‐Tal, Yuval Garini · 2015 · Physical Review E
33. Live-cell imaging of budding yeast telomerase RNA and TERRA
    Hadrien Laprade, Maxime Lalonde, David Guérit, Pascal Chartrand · 2016 · Methods
34. Imaging Transcriptional Regulation of Eukaryotic mRNA Genes: Advances and Outlook
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35. Methods for spatial and temporal imaging of the different steps involved in RNA processing at single‐molecule resolution
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36. On the right track
    Amir Mor, Rakefet Ben-Yishay, Yaron Shav‐Tal · 2010 · Nucleus
37. RNA polymerase II transcription on the fast lane
    Alessandro Marcello · 2012 · Transcription
38. Processivity and Coupling in Messenger RNA Transcription
    Stuart Aitken, Marie-Cécile Robert, Ross D. Alexander, Igor Goryanin, Édouard Bertrand, Jean D. Beggs · 2010 · PLoS ONE
39. Coupled RNA polymerase II transcription and 3′ end formation with yeast whole-cell extracts
    Luisa Mariconti, Bernhard Loll, Karola M. Schlinkmann, Agnieszka Wengi, Anton Meinhart, Bernhard Dichtl · 2010 · RNA
40. Single-cell, single-mRNA analysis of Ccnb1 promoter regulation
    Nidhi Vishnoi, Jie Yao · 2017 · Scientific Reports
41. The transcriptional cycle of HIV-1 in real-time and live cells
    Stéphanie Boireau, Paolo Maiuri, Eugenia I. Basyuk, Manuel de la Mata, Anna Knezevich, Bérangère Pradet-Balade, Volker Baecker, Alberto Rodolfo Kornblihtt, Alessandro Marcello, Édouard Bertrand · 2007 · The Journal of Experimental Medicine
42. Transcription factor residence time dominates over concentration in transcription activation
    Achim P. Popp, Johannes Hettich, J. Christof M. Gebhardt · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
43. Time-resolved analysis of transcription kinetics in single live mammalian cells
    Hongyoung Choi, Byung Hun Lee, Hye Yoon Park · 2022 · Frontiers in Physics
44. Measuring the Kinetics of mRNA Transcription in Single Living Cells
    Yehuda Brody, Yaron Shav‐Tal · 2011 · Journal of Visualized Experiments
45. Zooming in on single active genes in living mammalian cells
    Sharon Yunger, Alon Kalo, Pinhas Kafri, Jonathan Sheinberger, Erez Lavi, Noa Neufeld, Yaron Shav‐Tal · 2013 · Histochemistry and Cell Biology
46. Spatial Organization and Dynamics of Transcription Elongation and Pre-mRNA Processing in Live Cells
    Miguel Sánchez-Álvarez, Noemí Sánchez-Hernández, Carlos Suñé · 2011 · Genetics Research International
47. 2D and 3D FISH of expanded repeat RNAs in human lymphoblasts
    Martyna Olga Urbanek-Trzeciak, Michał Michalak, Włodzimierz J. Krzyżosiak · 2017 · Methods
48. Kinetic pathway of HIV-1 TAR cotranscriptional folding
    Lei Jin, Sicheng Zhang, Zhenwei Song, Xiao Heng, Shi‐Jie Chen · 2024 · Nucleic Acids Research
49. Pol II caught speeding by single gene imaging
    Danielle Cannon, Jonathan Robert Chubb · 2011 · EMBO Reports
50. Measuring transcription dynamics in living cells using a photobleaching approach
    Hodaya Hochberg-Laufer, Yehuda Brody, Yaron Shav‐Tal · 2017 · Methods
51. HIV RGB: Automated Single-Cell Analysis of HIV-1 Rev-Dependent RNA Nuclear Export and Translation Using Image Processing in KNIME
    Edward L. Evans, Ginger M. Pocock, Gabriel Einsdorf, Ryan T. Behrens, Ellen T. A. Dobson, Marcel Wiedenmann, Christian Birkhold, Paul Ahlquist, Kevin W. Eliceiri, Nathan M. Sherer · 2022 · Viruses
52. Visualizing transcription in real-time
    Yehuda Brody, Yaron Shav‐Tal · 2008 · Open Life Sciences
53. A search for potential anti-HIV phytoconstituents from the natural product repository
    Dharmraj V. Pathak, Sneha R. Sagar, Hardik Bhatt, Paresh K. Patel · 2022 · Oriental Pharmacy and Experimental Medicine
54. Transcriptional Initiation: Frequency, Bursting, and Transcription Factories
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55. Hierarchical interplay between H3K27ac and H3K4me3 in transcriptional regulation
    Chenwei Zhou, Chanjuan Dong, Weiye Zhao, Fu‐Sen Liang · 2026 · Nature Communications
56. Novel Imaging Technologies in the Study of HIV
    Bárbara Müller · 2011 · Future Virology
57. Quantitative Imaging of MS2-Tagged hTR in Cajal Bodies: Photobleaching and Photoactivation
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58. Higher frequency of intron loss from the promoter proximally paused genes ofDrosophila melanogaster
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59. Dynamics and Transport of Nuclear RNA
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60. Lessons from (pre-)mRNA Imaging.
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61. Shedding light on the unseen: how live imaging of translation could unlock new insights in developmental biology.
    Jérémy Dufourt, Maelle Bellec · 2024 · Comptes rendus. Biologies
62. Genomics, metagenomics, and pan-genomics approaches in COVID-19
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63. Infectious Virus Tracking by Fluorescent Live Cell Imaging in Primary Cells
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64. Human RNA Polymerase II Segregates from Genes and Nascent RNA and Transcribes in the Presence of DNA-Bound dCas9
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65. On the Potential for Multiscale Oscillatory Behavior in HIV
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66. Overcoming the Transcriptional Block: The HIV-1 Tat Auxiliary Protein
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67. Single-molecule RNA-FISH analysis reveals stochasticity in reactivation of latent HIV-1 regulated by Nuclear Orphan Receptors NR4A and cMYC
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68. The Recruitment And Dynamics Of Transcription Factors At The Hsp70 Loci In Living Cells
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69. Utilization Of Drosophila Hsp70 Gene For Identification Of Genuine Pol Ii Elongation Factors: Identification Of Spt6 As A Factor That Enhances The Elongation Rate Of Pol Ii In Vivo
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70. RNA polymerase on the clock
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71. Respuesta al daño al ADN: un ejemplo de acoplamiento entre transcripción y splicing alternativo
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72. Imaging Nascent RNA Dynamics in Dictyostelium
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73. Multi-omics analysis of transcription kinetics in human cells
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74. Author response: Kinetic competition during the transcription cycle results in stochastic RNA processing
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75. RNA labelling in live plants reveals single cell transcriptional dynamics: application to phosphate signaling
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76. Towards a Combined Therapy for Spinal Muscular Atrophy Based on Opposing Effects of an Antisense Oligonucleotide on Chromatin and Splicing
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77. Faculty Opinions recommendation of Rates of in situ transcription and splicing in large human genes.
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78. Overcoming the Transcriptional Block: The HIV-1 Tat Auxiliary Protein
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79. A First-Principles Approach to Decode the Interferon Response to MRNA-Based Vaccines in Antigen Presenting Cells
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80. Etude du mécanisme de rétrotransposition de LINE-1 chez l'homme.
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85. Real time imaging of transcription reveals new features of cellular and viral promoters
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86. Systematic imaging of single transcripts and polysomes reveals a widespread transport mechanism dependent on nascent translation
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89. The Role of Convergent Transcription in Regulating Alternative Splicing : Targeted Epigenetic Modification via Repurposed CRISPR/Cas9 System and Its Impact on Alternative Splicing Modulation
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90. Role of NF90 in the miRNA pathway
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91. Real-time imaging of transcription to study phosphate sensing in plants
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