Haplotype Structure and Population Genetic Inferences from Nucleotide-Sequence Variation in Human Lipoprotein Lipase

Cited by (382)

Items 101–200 of 382

1. Haplotyping as Perfect Phylogeny: A Direct Approach
   Vineet Bafna, Dan Gusfield, Giuseppe Lancia, Shibu Yooseph · 2003 · Journal of Computational Biology
2. Human demographic history: refining the recent African origin model.
   L. Excoffier · 2002 · Current Opinion in Genetics and Development
3. Interpretation of genetic association studies in complex disease
   Harry Campbell, Igor Rudan · 2002 · The Pharmacogenomics Journal
4. Nucleotide Diversity and Haplotype Structure of the Human Angiotensinogen Gene in Two Populations
   Toshiaki Nakajima, Lynn B. Jorde, Tomoaki Ishigami, Satoshi Umemura, Mitsuru Emi, Jean-Marc Lalouel, Ituro Inoue · 2002 · The American Journal of Human Genetics
5. Linkage disequilibrium mapping at DAT1, DRD5 and DBH narrows the search for ADHD susceptibility alleles at these loci
   Z. Hawi, N. Lowe, A. Kirley, F. Gruenhage, M. Nöthen, T. A. Greenwood, J. Kelsoe, Michael Fitzgerald, M. Gill · 2003 · Molecular Psychiatry
6. Population genomics: a bridge from evolutionary history to genetic medicine.
   L. Jorde, W. Watkins, M. Bamshad · 2001 · Human Molecular Genetics
7. Approximate likelihood methods for estimating local recombination rates
   P. Fearnhead, P. Donnelly · 2002
8. Characterization of multilocus linkage disequilibrium
   Alessandro Rinaldo, Silviu‐Alin Bacanu, Bernie Devlin, Vibhor A. Sonpar, Larry Wasserman, Kathryn Roeder · 2005 · Genetic Epidemiology
9. Evolutionary‐based association analysis using haplotype data
   Howard J. Seltman, Kathryn Roeder, Bernie Devlin · 2003 · Genetic Epidemiology
10. How Many SNPs Does a Genome-Wide Haplotype Map Require?
    Richard Judson, Benjamin A. Salisbury, Julie A. Schneider, Andreas Windemuth, J Claiborne Stephens · 2002 · Pharmacogenomics
11. SNP frequency and allelic haplotype structure of Beta vulgaris expressed genes
    K. Schneider, B. Weisshaar, D. Borchardt, F. Salamini · 2001 · Molecular breeding
12. Lower-than-expected linkage disequilibrium between tightly linked markers in humans suggests a role for gene conversion.
    K. Ardlie, S. Liu-Cordero, M. Eberle, M. Daly, J. Barrett, E. Winchester, E. Lander, L. Kruglyak · 2001 · American Journal of Human Genetics
13. Extreme discordant phenotype methodology: an intuitive approach to clinical pharmacogenetics.
    D. Nebert · 2000 · European Journal of Pharmacology
14. Bayesian haplo-type inference via the dirichlet process
    Eric P. Xing, Roded Sharan, Michael I. Jordan · 2004 · International Conference on Machine Learning
15. Genomewide Distribution of High-Frequency, Completely Mismatching SNP Haplotype Pairs Observed To Be Common across Human Populations
    Jinghui Zhang, William L. Rowe, Andrew G. Clark, Kenneth H. Buetow · 2003 · The American Journal of Human Genetics
16. Linkage analysis in the presence of errors III: marker loci and their map as nuisance parameters.
    H. Göring, J. Terwilliger · 2000 · American Journal of Human Genetics
17. The genetical history of humans and the great apes
    Henrik Kaessmann, Svante Pääbo · 2002 · Journal of Internal Medicine
18. A bias-ed assessment of the use of SNPs in human complex traits
    Joseph Douglas Terwilliger · 2002 · Current Opinion in Genetics & Development
19. 14 The future of genetic case-control studies
    Nicholas J. Schork, Dani Fallin, Bonnie Thiel, Xiping Xu, Ulrich Broeckel, Howard J. Jacob, Daniel Cohen · 2001 · Advances in genetics
20. Sequence analysis of the mannose-binding lectin (MBL2) gene reveals a high degree of heterozygosity with evidence of selection
    Toralf Bernig, James G. Taylor, Charles B. Foster, Brian J Staats, Meredith Yeager, Stephen Jacob Chanock · 2004 · Genes and Immunity
21. Sequencing the Entire Genomes of Free-Living Organisms: The Foundation of Pharmacology in the New Millennium
    Samuel E. Broder, J. Craig Venter · 2000 · The Annual Review of Pharmacology and Toxicology
22. Analysis of single‐locus tests to detect gene/disease associations
    Kathryn Roeder, Silviu‐Alin Bacanu, Vibhor A. Sonpar, Xiaohua Douglas Zhang, Bernie Devlin · 2005 · Genetic Epidemiology
23. Genome-wide variation in the human and fruitfly: a comparison.
    C. Aquadro, Vanessa L. Bauer DuMont, Floyd A. Reed · 2001 · Current Opinion in Genetics and Development
24. Patterns of genetic variation in Mendelian and complex traits.
    M. Zwick, D. Cutler, A. Chakravarti · 2000 · Annual review of genomics and human genetics (Print)
25. Evidence for positive selection and population structure at the human MAO-A gene
    Yoav Gilad, Shai Rosenberg, Molly Przeworski, Doron Lancet, Karl L. Skorecki · 2002 · Proceedings of the National Academy of Sciences
26. Genome diversity and gene haplotypes in the grapevine (Vitis vinifera L.), as revealed by single nucleotide polymorphisms
    Marzia Salmaso, Giorgia Faes, Cinzia Segala, M. Stefanini, Ilkhom B. Salakhutdinov, Eva Zyprian, Reinhard Toepfer, S. Grando, Riccardo Velasco · 2004 · Molecular Breeding
27. Haplotype and Linkage Disequilibrium Architecture for Human Cancer-Associated Genes
    Penelope E. Bonnen, Peggy J. Wang, Marek Kimmel, Ranajit Chakraborty, David Lee Nelson · 2002 · Genome Research
28. Finding genes underlying risk of complex disease by linkage disequilibrium mapping
    Andrew G. Clark · 2003 · Current Opinion in Genetics & Development
29. Testing multiregionality of modern human origins.
    N. Takahata, Sang-Hee Lee, Y. Satta · 2001 · Molecular biology and evolution
30. Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins.
    Sarah A. Tishkoff, A. Pakstis, M. Stoneking, J. Kidd, G. Destro-Bisol, A. Sanjantila, R. Lu, A. Deinard, Giorgio Sirugo, Trefor Jenkins et al. · 2000 · American Journal of Human Genetics
31. Integer Programming Approaches to Haplotype Inference by Pure Parsimony
    Dan Brown, Ian M. Harrower · 2006 · IEEE Transactions on Computational Biology and Bioinformatics
32. Loss of information due to ambiguous haplotyping of SNPs
    Susan E. Hodge, Michael Boehnke, M. Anne Spence · 1999 · Nature Genetics
33. Very large long–term effective population size in the virulent human malaria parasite Plasmodium falciparum
    A. Hughes, F. Vierra · 2001 · Proceedings of the Royal Society of London. Series B: Biological Sciences
34. Suggestions for the nomenclature of human alleles: relevance to ecogenetics, pharmacogenetics and molecular epidemiology
    Daniel W. Nebert · 2000 · Pharmacogenetics
35. Effectiveness of computational methods in haplotype prediction
    Chun‐Fang Xu, Karen F. Lewis, Kathryn L. Cantone, Parveen Khan, Christine Donnelly, Nicola J. White, Nikki Crocker, Pete R. Boyd, Dmitri V. Zaykin, Ian J. Purvis · 2001 · Human Genetics
36. A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
    Rany M. Salem, Jennifer Wessel, Nicholas J. Schork · 2005 · Human Genomics
37. Linkage Disequilibrium and Inference of Ancestral Recombination in 538 Single-Nucleotide Polymorphism Clusters across the Human Genome
    Andrew G. Clark, Rasmus Nielsen, James Signorovitch, Tara Cox Matise, Stephen Glanowski, Jeremy Heil, Emily S. Winn-Deen, Arthur L. Holden, Eric Lai · 2003 · The American Journal of Human Genetics
38. Haplotypic analysis of the TNF locus by association efficiency and entropy
    Hans Christian Ackerman, Stanley Usen, Richard Mott, Anna E. Jeffreys, Fatoumatta Sisay-Joof, Pauline Katundu, Terrie Ellen Taylor, Ryk H. Ward, Malcolm Edward Molyneux, Margaret Pinder et al. · 2003 · Genome biology
39. Strategies in complex disease mapping.
    Gillian C. L. Johnson, J. Todd · 2000 · Current Opinion in Genetics and Development
40. Power of Association and Linkage Tests When the Disease Alleles Are Unobserved
    I‐Ping Tu, Alice S. Whittemore · 1999 · The American Journal of Human Genetics
41. High Levels of Sequence Polymorphism and Linkage Disequilibrium at the Telomere of 12q: Implications for Telomere Biology and Human Evolution
    Duncan M. Baird, Joanna Coleman, Zoë H. Rosser, Nicola J. Royle · 2000 · The American Journal of Human Genetics
42. Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes
    Yoav Gilad, Daniel Segrè, Karl L. Skorecki, Michael W. Nachman, Doron Lancet, Dror Sharon · 2000 · Nature Genetics
43. Linkage Disequilibrium and Haplotype Diversity in the Genes of the Renin–Angiotensin System: Findings From the Family Blood Pressure Program
    Xiaofeng Zhu, Denise Lu Shun Yan, Richard Cooper, Amy Luke, Morna A. Ikeda, Yen-Pei C. Chang, Alan B. Weder, Aravinda Chakravarti · 2003 · Genome Research
44. Genetics of coronary heart disease: Current knowledge and research principles
    Bernhard Rudolf Winkelmann, Joerg Hager, William E. Kraus, Piera Angelica Merlini, Bernard D. Keavney, Peter J. Grant, Joseph Brent Muhlestein, Christopher Bull Granger · 2000 · American Heart Journal
45. Exact algorithms for haplotype assembly from whole-genome sequence data
    Zhi-Zhong Chen, F. Deng, Lu-Sheng Wang · 2013 · Bioinform.
46. Why is there so little intragenic linkage disequilibrium in humans ?
    Molly Przeworski, Jeffrey D. Wall · 2001 · Genetics Research
47. Identification, characterisation and application of single nucleotide polymorphisms for diversity assessment in cassava (Manihot esculenta Crantz)
    R. Kawuki, Morag Elizabeth Ferguson, Maryke Tine Labuschagne, L. Herselman, Dong-Jin Kim · 2009 · Molecular Breeding
48. Evaluating HapMap SNP data transferability in a large-scale genotyping project involving 175 cancer-associated genes
    Gloría Ribas, Anna González‐Neira, Antonio Salas, Roger Laughlin Milne, Ana Vega, Begoña Carracedo, Emilio González, Eva Barroso, Lara Paula Fernández, Patricio Yankilevich et al. · 2005 · Human Genetics
49. Sequence variability of a human pseudogene.
    Rosa Martínez-Arias, Francesc Calafell, E. Mateu, D. Comas, Aida M. Andrés, J. Bertranpetit · 2001 · Genome Research
50. Efficient selection of tagging single-nucleotide polymorphisms in multiple populations
    B. Howie, C. Carlson, M. Rieder, D. Nickerson · 2006 · Human Genetics
51. Searching high and low: a review of the genetics of bipolar disorder
    James B. Potash, J. Raymond DePaulo · 2000 · Bipolar Disorders
52. Genetic screening of the lipoprotein lipase gene for mutations associated with high triglyceride/low HDL-cholesterol levels
    Hamid Razzaghi, Christopher E. Aston, Richard F. Hamman, M. Ilyas Kamboh · 2000 · Human Genetics
53. Large-Scale Single-Nucleotide Polymorphism (SNP) and Haplotype Analyses, Using Dense SNP Maps, of 199 Drug-Related Genes in 752 Subjects: the Analysis of the Association between Uncommon SNPs within Haplotype Blocks and the Haplotypes Constructed with Haplotype-Tagging SNPs
    Naoyuki Kamatani, Akihiro Sekine, Takuya Kitamoto, Aritoshi Iida, Susumu Saito, Akifumi Kogame, Eisuke Inoue, Manabu Kawamoto, Masayoshi Harigai, Yusuke Nakamura · 2004 · The American Journal of Human Genetics
54. Understanding the accuracy of statistical haplotype inference with sequence data of known phase
    Andrés, Aida M., Clark, Andrew G., Shimmin, Lawrence, Boerwinkle, Eric, Sing, Charles F., Hixson, James E. · 2007 · Genetic Epidemiology
55. The effect of single nucleotide polymorphism identification strategies on estimates of linkage disequilibrium.
    J. Akey, Kun Zhang, M. Xiong, Li Jin · 2003 · Molecular biology and evolution
56. Single nucleotide polymorphism and linkage disequilibrium within the TCR alpha/delta locus
    Miriam F. Moffatt · 2000 · Human Molecular Genetics
57. Gene density and human nucleotide polymorphism.
    B. Payseur, M. Nachman · 2002 · Molecular biology and evolution
58. A coalescent approach to study linkage disequilibrium between single-nucleotide polymorphisms.
    S. Zöllner, A. von Haeseler · 2000 · American Journal of Human Genetics
59. Single Marker and Haplotype-Based Association Analysis of Semolina and Pasta Colour in Elite Durum Wheat Breeding Lines Using a High-Density Consensus Map
    Amidou N’Diaye, Jemanesh K. Haile, Aron T. Cory, F. R. Clarke, J. M. Clarke, R. E. Knox, Curtis Jerry Pozniak · 2017 · PLoS ONE
60. Linkage Disequilibrium Analysis of Biallelic DNA Markers, Human Quantitative Trait Loci, and Threshold-Defined Case and Control Subjects
    Schork, Nicholas J., Nath, Swapan K., Fallin, Daniele, Chakravarti, Aravinda · 2000 · The American Journal of Human Genetics
61. Heterogeneity of linkage disequilibrium in human genes has implications for association studies of common diseases
    Laurence Tiret · 2002 · Human Molecular Genetics
62. A highly variable segment of human subterminal 16p reveals a history of population growth for modern humans outside Africa
    Santos Alonso, John A.L. Armour · 2000 · Proceedings of the National Academy of Sciences
63. An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium.
    I. Eisenbarth, Gunther Vogel, W. Krone, W. Vogel, G. Assum · 2000 · American Journal of Human Genetics
64. Genotypng:Genetic variation in coronary heart disease and myocardial infarction: methodological overview and clinical evidence
    Bernhard Rudolf Winkelmann, Joerg Hager · 2000 · Pharmacogenomics
65. Relative efficiency of ambiguous vs. directly measured haplotype frequencies
    Daniel J. Schaid · 2002 · Genetic Epidemiology
66. Haplotypes at ATM Identify Coding-Sequence Variation and Indicate a Region of Extensive Linkage Disequilibrium
    Penelope E. Bonnen, Michael D. Story, Cheryl L. Ashorn, Thomas A. Buchholz, Michael M. Weil, David Lee Nelson · 2000 · The American Journal of Human Genetics
67. Haplotypes in the dystrophin DNA segment point to a mosaic origin of modern human diversity.
    E. Ziętkiewicz, V. Yotova, Dominik Gehl, T. Wambach, I. Arrieta, M. Batzer, D. Cole, P. Hechtman, F. Kaplan, D. Modiano et al. · 2003 · American Journal of Human Genetics
68. Notes from the SNP vs. haplotype front
    Richard Judson, J Claiborne Stephens · 2001 · Pharmacogenomics
69. Whole-genome DNA sequencing
    E. Myers · 1999 · Comput. Sci. Eng.
70. Mitochondrial DNA sequence diversity in bipolar affective disorder.
    F. McMahon, Yu-Sheng Chen, S. Patel, J. Kokoszka, Michael D. Brown, A. Torroni, J. DePaulo, D. Wallace · 2000 · American Journal of Psychiatry
71. Patterns of ethnic diversity among the genes that influence AIDS
    Cheryl Ann Winkler · 2004 · Human Molecular Genetics
72. Haplotypes and the systematic analysis of genetic variation in genes and genomes.
    M. Hoehe · 2003 · Pharmacogenomics (London)
73. An Overview of Combinatorial Methods for Haplotype Inference
    Dan Gusfield · 2004 · Lecture notes in computer science
74. Linkage and association: basic concepts.
    I. Borecki, M. Province · 2008 · Advances in Genetics
75. Survey of the fragile X syndrome CGG repeat and the short-tandem-repeat and single-nucleotide-polymorphism haplotypes in an African American population.
    Dana C. Crawford, Charles E. Schwartz, K. Meadows, James L. Newman, Lisa F. Taft, Chris Gunter, W. T. Brown, N. Carpenter, P. Howard-Peebles, Kristin G. Monaghan et al. · 2000 · American Journal of Human Genetics
76. SNP haplotypes and allele frequencies show evidence for disruptive and balancing selection in the human leukocyte receptor complex
    P. Norman, M. A. Cook, B. S. Carey, C. Carrington, D. Verity, K. Hameed, D. Ramdath, Dasnayanee Chandanayingyong, M. Leppert, H. Stephens et al. · 2004 · Immunogenetics
77. A cSNP map and database for human chromosome 21.
    S. Deutsch, C. Iseli, Philipp Bucher, S. Antonarakis, H. Scott · 2001 · Genome Research
78. Interpreting sex differences in enamel hypoplasia in human and non-human primates: Developmental, environmental, and cultural considerations
    Debbie Guatelli‐Steinberg, John R. Lukacs · 1999 · American Journal of Physical Anthropology
79. A genetic algorithm-support vector machine method with parameter optimization for selecting the tag SNPs
    I. Ilhan, G. Tezel · 2013 · Journal of Biomedical Informatics
80. The effects of scale: variation in the APOA1/C3/A4/A5 gene cluster
    S. Fullerton, A. Buchanan, Vibhor A. Sonpar, Scott L. Taylor, Joshua D. Smith, C. Carlson, V. Salomaa, J. Stengård, E. Boerwinkle, A. Clark et al. · 2004 · Human Genetics
81. Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution
    Yun S. Song, Y. Wu, D. Gusfield · 2005 · Intelligent Systems in Molecular Biology
82. Haplotypic relationship between SNP and microsatellite markers at the NOS2A locus in two populations
    D. Burgner, K. Rockett, H. Ackerman, J. Hull, S. Usen, M. Pinder, D. Kwiatkowski · 2003 · Genes and Immunity
83. Making Genomic Medicine a Reality
    A. Beaudet · 1999 · The American Journal of Human Genetics
84. Genetic polymorphisms, lipoproteins and coronary artery disease risk
    Philippa J. Talmud, Steve Eric Humphries · 2001 · Current Opinion in Lipidology
85. In search of human variation.
    Kenneth M. Weiss · 1998 · Genome Research
86. Population bottlenecks and patterns of human polymorphism
    Jody Hey, Eugene E. Harris · 1999 · Molecular Biology and Evolution
87. Segmental linkage disequilibrium within the dopamine transporter gene
    T. A. Greenwood, M. Alexander, Paul E. Keck, S. L. Mcelroy, A. Sadovnick, Ronald A. Remick, S. Shaw, J. Kelsoe · 2002 · Molecular Psychiatry
88. Improved risk prediction for Crohn's disease with a multi-locus approach.
    Jia Kang, S. Kugathasan, M. Georges, Hong-Yu Zhao, Judy H. Cho · 2011 · Human Molecular Genetics
89. An Exactly Solved Model for Mutation, Recombination and Selection
    M. Baake, Ellen Baake · 2002 · Canadian Journal of Mathematics - Journal Canadien de Mathematiques
90. Estimate of nucleotide diversity in dogs with a pool-and-sequence method
    J. A. Brouillette, Jennifer R. Andrew, Patrick J. Venta · 2000 · Mammalian Genome
91. Gene Mapping in the 20th and 21st Centuries: Statistical Methods, Data Analysis, and Experimental Design
    Joseph Douglas Terwilliger, Harald H.H. Göring · 2009 · Human Biology
92. Effects of Worldwide Population Subdivision onALDH2Linkage Disequilibrium
    Raymond J. Peterson, David A Goldman, Jeffrey C. Long · 1999 · Genome Research
93. Significant variation in haplotype block structure but conservation in tagSNP patterns among global populations
    Sheng Gu, ANDREW J. PAKSTIS, Hui Li, William C. Speed, Judith R. Kidd, Kenneth K. Kídd · 2007 · European Journal of Human Genetics
94. Dynamic Relationships between the Genome and Exposures to Environments as Causes of Common Human Diseases
    Charles F. Sing, Jari Stengård, Sharon L. R. Kardia · 2004 · KARGER eBooks
95. Haplotype structure and evidence for positive selection at the human IL13 locus.
    Gang-Qiao Zhou, Y. Zhai, Xiaojia Dong, Xiu-Mei Zhang, Feng-Ying He, K. Zhou, Yun-Ping Zhu, Handong Wei, Zhi-Jian Yao, Shaofei Zhong et al. · 2003 · Molecular biology and evolution
96. Statistical estimation and pedigree analysis ofCCR2-CCR5 haplotypes
    V. Clark, N. Metheny, M. Dean, Raymond J. Peterson · 2001 · Human Genetics
97. Intercellular adhesion molecule-1 (ICAM-1) K469E polymorphism: no association with type 1 diabetes among Finns.
    S. Nejentsev, A. Laine, O. Simell, J. Ilonen · 2000 · Tissue Antigens
98. Complex HTR2C linkage disequilibrium and promoter associations with body mass index and serum leptin
    Shane McCarthy, Salim Mottagui‐Tabar, Yumi Mizuno, Bengt Sennblad, Johan Hoffstedt, Peter Arner, Claes Wahlestedt, Björn Andersson · 2005 · Human Genetics
99. Comparison of strategies for selecting single nucleotide polymorphisms for case/control association studies
    Qi-Qing Huang, Yun-Xin Fu, E. Boerwinkle · 2003 · Human Genetics
100. Gingival Diseases - Their Aetiology, Prevention and Treatment
     F. Panagakos, R. Davies · 2011