The DOI matches its Crossref record; 33 of the 33 references it cites were found in a registry or an index.
Implementation and evaluation of various demons deformable image registration algorithms on a GPU
Open accessAbstract
Online adaptive radiation therapy (ART) promises the ability to deliver an optimal treatment in response to daily patient anatomic variation. A major technical barrier for the clinical implementation of online ART is the requirement of rapid image segmentation. Deformable image registration (DIR) has been used as an automated segmentation method to transfer tumor/organ contours from the planning image to daily images. However, the current computational time of DIR is insufficient for online ART. In this work, this issue is addressed by using computer graphics processing units (GPUs). A gray-scale-based DIR algorithm called demons and five of its variants were implemented on GPUs using the compute unified device architecture (CUDA) programming environment. The spatial accuracy of these algorithms was evaluated over five sets of pulmonary 4D CT images with an average size of 256 x 256 x 100 and more than 1100 expert-determined landmark point pairs each. For all the testing scenarios presented in this paper, the GPU-based DIR computation required around 7 to 11 s to yield an average 3D error ranging from 1.5 to 1.8 mm. It is interesting to find out that the original passive force demons algorithms outperform subsequently proposed variants based on the combination of accuracy, efficiency and ease of implementation.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Bu uygulamalar özellikle çözünürlük arttığında ve bölütleme işlemi çoklu eşikleme şeklinde olduğunda yüksek işlem zamanı gerektirmektedir [69].”
From GPU Programlamada CUDA Platformu Kullanılan Paralel Görüntü İşleme Çalışmalarının İncelenmesi (2020) · cites this paper as [69]
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Image matching as a diffusion process: an analogy with maxwell’s demons
Thirion, J.-P. (1998) · Medical Image Analysis · doi:10.1016/s1361-8415(98)80022-4 · Cited by 2,445
Hill, D. L. G., Batchelor, P. G., Holden, M., & Hawkes, D. J. (2001) · Physics in Medicine and Biology · doi:10.1088/0031-9155/46/3/201 · Cited by 2,093 · cited 1×
“To realize the clinical application of DIR, much effort has been invested to develop fast and accurate algorithms (Hill et al. , 2001; Crum et al. , 2004; Holden, 2008).”
MethodFlat-panel cone-beam computed tomography for image-guided radiation therapy
Jaffray, D. A., Siewerdsen, J. H., Wong, J. W., & Martinez, A. A. (2002) · International Journal of Radiation Oncology*Biology*Physics · doi:10.1016/s0360-3016(02)02884-5 · Cited by 1,331
Yan, D., Vicini, F. A., Wong, J. W., & Martinez, A. A. (1997) · Physics in Medicine and Biology · doi:10.1088/0031-9155/42/1/008 · Cited by 767
Non-rigid image registration: theory and practice
Crum, W. R., Hartkens, T., & Hill, D. (2004) · British Journal of Radiology · doi:10.1259/bjr/25329214 · Cited by 719
Castillo, R., Castillo, E., Guerra, R., Johnson, V., McPhail, T., Garg, A. K., & Guerrero, T. (2009) · Physics in Medicine and Biology · doi:10.1088/0031-9155/54/7/001 · Cited by 645
Self-citationWang, H., Dong, L., O'Daniel, J. C., Mohan, R., Garden, A. S., Ang, K. K., Kuban, D. A., Bonnen, M., Chang, J. Y., & Cheung, R. M. (2005) · Physics in Medicine and Biology · doi:10.1088/0031-9155/50/12/011 · Cited by 610
Ecient Sparse Matrix-Vector Multiplication on CUDA
Bell, N., & Garland, M. (2008) · Cited by 575
A Review of Geometric Transformations for Nonrigid Body Registration
Holden, M. P. (2008) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2007.904691 · Cited by 365
GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model
Preis, T., Virnau, P., Paul, W., & Schneider, J. (2009) · Journal of Computational Physics · doi:10.1016/j.jcp.2009.03.018 · Cited by 332
Understanding the “Demon’s Algorithm”: 3D Non-rigid Registration by Gradient Descent
Pennec, X., Cachier, P., & Ayache, N. (1999) · Lecture notes in computer science · doi:10.1007/10704282_64 · Cited by 241
Mohan, R., Zhang, X., Wang, H., et al. (2005) · International Journal of Radiation Oncology*Biology*Physics · doi:10.1016/j.ijrobp.2004.11.033 · Cited by 228
Real-time 3D computed tomographic reconstruction using commodity graphics hardware
Xu, F., & Mueller, K. D. (2007) · Physics in Medicine and Biology · doi:10.1088/0031-9155/52/12/006 · Cited by 224
Sharp, G. C., Kandasamy, N., Singh, H., & Folkert, M. R. (2007) · Physics in Medicine and Biology · doi:10.1088/0031-9155/52/19/003 · Cited by 190
Fast Non-Rigid Matching of 3D Medical Images
Thirion, J. (1995) · OpenGrey (Institut de l'Information Scientifique et Technique) · Cited by 150
Adapting inverse planning to patient and organ geometrical variation: algorithm and implementation
Birkner, M., Yan, D., Alber, M. L., et al. (2003) · Medical Physics · doi:10.1118/1.1610751 · Cited by 134
On-line re-optimization of prostate IMRT plans for adaptive radiation therapy
Wu, Q., Thongphiew, D., Wang, Z., et al. (2008) · Physics in Medicine and Biology · doi:10.1088/0031-9155/53/3/011 · Cited by 124
Re-optimization in adaptive radiotherapy
Wu, C., Jeraj, R., Olivera, G., et al. (2002) · Physics in Medicine and Biology · doi:10.1088/0031-9155/47/17/309 · Cited by 121
Samant, S. S., Xia, J., Muyan‐Özçelik, P., & Owens, J. D. (2008) · Medical Physics · doi:10.1118/1.2948318 · Cited by 119
GPU-based ultrafast IMRT plan optimization
Men, C., Gu, X., Choi, D., Majumdar, A., Zheng, Z., Mueller, K. D., & Jiang, S. B. (2009) · Physics in Medicine and Biology · doi:10.1088/0031-9155/54/21/008 · Cited by 115
Self-citationYang, D., Li, H., Low, D. A., Deasy, J. O., & Naqa, I. E. (2008) · Physics in Medicine and Biology · doi:10.1088/0031-9155/53/21/017 · Cited by 111
Self-citationRogelj, P., & Kovačič, S. (2005) · Medical Image Analysis · doi:10.1016/j.media.2005.03.003 · Cited by 100
Formulating adaptive radiation therapy (ART) treatment planning into a closed-loop control framework
de la Zerda, A., Armbruster, B., & Xing, L. (2007) · Physics in Medicine and Biology · doi:10.1088/0031-9155/52/14/008 · Cited by 98
Noe, K. Ø., de Senneville, B. D., Elstrøm, U. V., et al. (2008) · Acta Oncologica · doi:10.1080/02841860802258760 · Cited by 83
GPU-based ultra-fast dose calculation using a finite pencil beam model
Gu, X., Choi, D., Men, C., et al. (2009) · Physics in Medicine and Biology · doi:10.1088/0031-9155/54/20/017 · Cited by 81
Self-citationTowards real-time radiation therapy: GPU accelerated superposition/convolution
Jacques, R., Taylor, R. H., Wong, J. W., et al. (2009) · Computer Methods and Programs in Biomedicine · doi:10.1016/j.cmpb.2009.07.004 · Cited by 75
Fast convolution‐superposition dose calculation on graphics hardware
Hissoiny, S., Ozell, B., & Després, P. (2009) · Medical Physics · doi:10.1118/1.3120286 · Cited by 56
Automated registration of large deformations for adaptive radiation therapy of prostate cancer
Godley, A. R., Ahunbay, E. E., Peng, C., et al. (2009) · Medical Physics · doi:10.1118/1.3095777 · Cited by 53
Fu, W., Yang, Y., Yue, N. J., et al. (2009) · Physics in Medicine and Biology · doi:10.1088/0031-9155/54/6/019 · Cited by 45
Fast treatment plan modification with an over-relaxed Cimmino algorithm
Wu, C., Jeraj, R., Lu, W., et al. (2004) · Medical Physics · doi:10.1118/1.1631913 · Cited by 40
Adaptive fractionation therapy: I. Basic concept and strategy
Lu, W., Chen, M., Chen, Q., et al. (2008) · Physics in Medicine and Biology · doi:10.1088/0031-9155/53/19/015 · Cited by 31
Automated Registration of Large Deformations for Adaptive Radiation Therapy of Prostate Cancer
Godley, A. R., Ahunbay, E. E., Peng, C., et al. (2008) · International Journal of Radiation Oncology*Biology*Physics · doi:10.1016/j.ijrobp.2008.06.114 · Cited by 4
Hardware accelerated C-arm CT and fluoroscopy: a pilot study
Riabkov, D. Y., Brown, T. C., Cheryauka, A., et al. (2008) · Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE · doi:10.1117/12.769851 · Cited by 3
Research works printed but not linked: 4
- Jacques R Taylor R Wong J McNutt T, 2008, High-Performance Medical Image Computing and Computer Aided Intervention Workshop
- Li M, 2007, Med. Imaging Technol., 25, 243
- Pennec X Cachier P Ayache N Taylor C Colchester A, 1999, Proc. 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention-MICCAI'99, 597
- Riabkov D, 2008, Proc. SPIE, 69132, V1
Cited by
Sorted by citations
GPU Programlamada CUDA Platformu Kullanılan Paralel Görüntü İşleme Çalışmalarının İncelenmesi
AYDIN, S., SAMET, R., & BAY, Ö. F. (2020) · Politeknik Dergisi · doi:10.2339/politeknik.563767 · Cited by 3
“Computational Sciences and Its Applications, 223233, (2008) [71] Gu X.”
Background
Metadata
- Authors
- Gu, X., Pan, H., Liang, Y., Castillo, R., Yang, D., Choi, D., Castillo, E., Majumdar, A., Guerrero, T., & Jiang, S. B.
- Affiliations
- University of California San Diego (US)
- The University of Texas MD Anderson Cancer Center (US)
- Washington University in St. Louis (US)
- San Diego Supercomputer Center (US)
- ORCID
- Venue
- Physics in Medicine and Biology
- Publisher
- IOP Publishing
- Published
- 2009-12-11
- Volume
- 55
- Issue
- 1
- Pages
- 207-219
- ISSN
- 0031-9155 (ISSN-L)
- 1361-6560
- PMC
- PMC7540904
- OpenAlex
- W2133277680
- Cited by
- 243
- References
- 33
- Citations by year
- 2026: 2 · 2025: 6 · 2024: 2 · 2023: 5 · 2022: 7 · 2021: 8 · 2020: 12 · 2019: 13 · 2018: 13 · 2017: 12 · 2016: 17 · 2015: 29 · 2014: 22 · 2013: 35 · 2012: 20
- FWCI
- 19.05
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Physics in Medicine and Biology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- arXiv (Cornell University) (submittedVersion)
- arXiv (Cornell University)
- Funders
- Nvidia
- National Institutes of Health
- National Cancer Institute (F32CA154045, R21CA141833, R21CA128230, T32CA119930)
- Topics
- Physical Sciences › Physics and Astronomy › Radiation › Advanced Radiotherapy Techniques
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Medical Image Segmentation Techniques
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Radiation Dose and Imaging
- Keywords
- deformable image registration, Demons algorithm, GPU acceleration, online adaptive radiotherapy, image segmentation, 4D-CT, lung CT, CUDA
- MeSH terms
- Algorithms, Computer Graphics, Humans, Image Processing, Computer-Assisted, Lung, Time Factors, Tomography, X-Ray Computed, Databases as Topic, Imaging, Three-Dimensional
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review