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Stochastic thermodynamics, fluctuation theorems and molecular machines
Open accessAbstract
Stochastic thermodynamics as reviewed here systematically provides a framework for extending the notions of classical thermodynamics such as work, heat and entropy production to the level of individual trajectories of well-defined non-equilibrium ensembles. It applies whenever a non-equilibrium process is still coupled to one (or several) heat bath(s) of constant temperature. Paradigmatic systems are single colloidal particles in time-dependent laser traps, polymers in external flow, enzymes and molecular motors in single molecule assays, small biochemical networks and thermoelectric devices involving single electron transport. For such systems, a first-law like energy balance can be identified along fluctuating trajectories. For a basic Markovian dynamics implemented either on the continuum level with Langevin equations or on a discrete set of states as a master equation, thermodynamic consistency imposes a local-detailed balance constraint on noise and rates, respectively. Various integral and detailed fluctuation theorems, which are derived here in a unifying approach from one master theorem, constrain the probability distributions for work, heat and entropy production depending on the nature of the system and the choice of non-equilibrium conditions. For non-equilibrium steady states, particularly strong results hold like a generalized fluctuation-dissipation theorem involving entropy production. Ramifications and applications of these concepts include optimal driving between specified states in finite time, the role of measurement-based feedback processes and the relation between dissipation and irreversibility. Efficiency and, in particular, efficiency at maximum power can be discussed systematically beyond the linear response regime for two classes of molecular machines, isothermal ones such as molecular motors, and heat engines such as thermoelectric devices, using a common framework based on a cycle decomposition of entropy production.
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“Thermodynamically, both enzymes and molecular motors can be described by ensembles of a discrete set of states.532–533”
From Protein Ensembles: How Does Nature Harness Thermodynamic Fluctuations for Life? The Diverse Functional Roles of Conformational Ensembles in the Cell (2016) · cites this paper as [532]
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Items 401–600 of 707
Nonequilibrium Statistical Physics
Pottier, N. (2009) · doi:10.1093/oso/9780199556885.001.0001 · Cited by 61
Path Integrals in Physics: Volume I Stochastic Processes and Quantum Mechanics
Чайчиан, М., & Demichev, A. P. (2001) · Cited by 60
Lipowsky, R., & Liepelt, S. (2007) · Journal of Statistical Physics · doi:10.1007/s10955-007-9425-7 · Cited by 60
Entropy Production for Mechanically or Chemically Driven Biomolecules
Schmiedl, T., Speck, T., & Seifert, U. (2006) · Journal of Statistical Physics · doi:10.1007/s10955-006-9148-1 · Cited by 60
Self-citationA meaningful expansion around detailed balance
Colangeli, M., Maes, C., & Wynants, B. (2011) · Journal of Physics A Mathematical and Theoretical · doi:10.1088/1751-8113/44/9/095001 · Cited by 60
Thermodynamic cost of measurements
Granger, L., & Kantz, H. (2011) · Physical Review E · doi:10.1103/physreve.84.061110 · Cited by 59
Fluctuation symmetries for work and heat
Baiesi, M., Jacobs, T., Maes, C., et al. (2006) · Physical Review E · doi:10.1103/physreve.74.021111 · Cited by 59
de Koning, M. (2005) · The Journal of Chemical Physics · doi:10.1063/1.1860556 · Cited by 59
The stochastic chemomechanics of the -ATPase molecular motor
Gaspard, P., & Gerritsma, E. (2007) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2007.03.034 · Cited by 59
Fluctuation and Dissipation in Liquid-Crystal Electroconvection
Goldburg, W. I., Goldschmidt, Y. Y., & Kellay, H. (2001) · Physical Review Letters · doi:10.1103/physrevlett.87.245502 · Cited by 59
Stochastic Energetics for Non-Gaussian Processes
Kanazawa, K., Sagawa, T., & Hayakawa, H. (2012) · Physical Review Letters · doi:10.1103/physrevlett.108.210601 · Cited by 58
Entropy production theorems and some consequences
Saha, A., Lahiri, S., & Jayannavar, A. M. (2009) · Physical Review E · doi:10.1103/physreve.80.011117 · Cited by 58
Single-Molecule Dynamics of Mechanical Coiled-Coil Unzipping
Bornschlögl, T., & Rief, M. (2007) · Langmuir · doi:10.1021/la7023567 · Cited by 57
Synthetic Mechanochemical Molecular Swimmer
Golestanian, R. (2010) · Physical Review Letters · doi:10.1103/physrevlett.105.018103 · Cited by 57
Optimal Estimates of Free Energies from Multistate Nonequilibrium Work Data
Maragakis, P., Spichty, M., & Karplus, M. (2006) · Physical Review Letters · doi:10.1103/physrevlett.96.100602 · Cited by 57
Qian, H., & Xie, X. S. (2006) · Physical Review E · doi:10.1103/physreve.74.010902 · Cited by 57
Universal Aspects of the Chemomechanical Coupling for Molecular Motors
Lipowsky, R. (2000) · Physical Review Letters · doi:10.1103/physrevlett.85.4401 · Cited by 56
Fluctuation relation for heat engines
Sinitsyn, N. A. (2011) · Journal of Physics A Mathematical and Theoretical · doi:10.1088/1751-8113/44/40/405001 · Cited by 56
Apertet, Y., Ouerdane, H., Goupil, C., et al. (2012) · Physical Review E · doi:10.1103/physreve.85.031116 · Cited by 56
Extended fluctuation-dissipation theorem for soft matter in stationary flow
Speck, T., & Seifert, U. (2009) · Physical Review E · doi:10.1103/physreve.79.040102 · Cited by 56
Self-citationPower fluctuations in stochastic models of dissipative systems
Farago, J. (2003) · Physica A Statistical Mechanics and its Applications · doi:10.1016/j.physa.2003.09.006 · Cited by 56
Generating function formula of heat transfer in harmonic networks
Saito, K., & Dhar, A. (2011) · Physical Review E · doi:10.1103/physreve.83.041121 · Cited by 55
Fluctuation dissipation relations far from equilibrium
Corberi, F., Lippiello, E., & Zannetti, M. (2007) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2007/07/p07002 · Cited by 55
Fluctuation theorems in the presence of information gain and feedback
Lahiri, S., Rana, S., & Jayannavar, A. M. (2012) · Journal of Physics A Mathematical and Theoretical · doi:10.1088/1751-8113/45/6/065002 · Cited by 55
Speck, T., & Seifert, U. (2005) · The European Physical Journal B · doi:10.1140/epjb/e2005-00086-6 · Cited by 55
Self-citationQuantum fluctuation theorem for heat exchange in the strong coupling regime
Nicolin, L., & Segal, D. (2011) · Physical Review B · doi:10.1103/physrevb.84.161414 · Cited by 54
Far-from-equilibrium measurements of thermodynamic length
Feng, E. H., & Crooks, G. E. (2009) · Physical Review E · doi:10.1103/physreve.79.012104 · Cited by 54
Heat and work fluctuations for a harmonic oscillator
Sabhapandit, S. (2012) · Physical Review E · doi:10.1103/physreve.85.021108 · Cited by 54
Fluctuation relations in simple examples of non-equilibrium steady statesPreprint
Chétrite, R., & Gregory Falkovich, E. A. (2008) · Cited by 54
Douarche, F., Ciliberto, S., & Petrossian, A. (2005) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2005/09/p09011 · Cited by 53
Min, W., Jiang, L., Yu, J. W., et al. (2005) · Nano Letters · doi:10.1021/nl0521773 · Cited by 53
Nonequilibrium thermodynamics as a gauge theory
Polettini, M. (2012) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/97/30003 · Cited by 53
Fluctuation theorem for the effusion of an ideal gas
Cleuren, B., den Broeck, C. V., & Kawai, R. (2006) · Physical Review E · doi:10.1103/physreve.74.021117 · Cited by 53
Study of stochastic resonance by method of stochastic energetics
Iwai, T. (2001) · Physica A Statistical Mechanics and its Applications · doi:10.1016/s0378-4371(01)00349-1 · Cited by 52
Representation of Nonequilibrium Steady States in Large Mechanical Systems
Komatsu, T., Nakagawa, N., Sasa, S., et al. (2009) · Journal of Statistical Physics · doi:10.1007/s10955-009-9678-4 · Cited by 52
Time-Reversal and EntropyPreprint
Maes, C., & Netočný, K. (2002) · arXiv (Cornell University) · doi:10.48550/arxiv.cond-mat/0202501 · Cited by 52
Synthetic Molecular Motors and Mechanical Machines.
Kay, E. R., Leigh, D. A., & Zerbetto, F. (2007) · ChemInform · doi:10.1002/chin.200710251 · Cited by 52
Fluctuation theorem for birth–death or chemical master equations with time-dependent rates
Seifert, U. (2004) · Journal of Physics A Mathematical and General · doi:10.1088/0305-4470/37/42/l04 · Cited by 51
Self-citationVerley, G., Mallick, K., & Lacoste, D. (2011) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/93/10002 · Cited by 51
Asymptotics of work distributions: the pre-exponential factor
Nickelsen, D., & Engel, A. (2011) · The European Physical Journal B · doi:10.1140/epjb/e2011-20133-y · Cited by 50
Mehl, J., Blickle, V., Seifert, U., et al. (2010) · Physical Review E · doi:10.1103/physreve.82.032401 · Cited by 50
Self-citationFree Energy of Membrane Protein Unfolding Derived from Single-Molecule Force Measurements
Preiner, J., Janovjak, H., Rankl, C., Knaus, H., Cisneros, D. A., Kedrov, A., Kienberger, F., Müller, D. J., & Hinterdorfer, P. (2007) · Biophysical Journal · doi:10.1529/biophysj.106.096982 · Cited by 50
Systematic Finite-Sampling Inaccuracy in Free Energy Differences and Other Nonlinear Quantities
Zuckerman, D. M., & Woolf, T. B. (2004) · Journal of Statistical Physics · doi:10.1023/b:joss.0000013961.84860.5b · Cited by 50
Speck, T. (2011) · Journal of Physics A Mathematical and Theoretical · doi:10.1088/1751-8113/44/30/305001 · Cited by 50
Cooling Classical Particles with a Microcanonical Szilard Engine
Marathe, R., & Parrondo, J. M. R. (2010) · Physical Review Letters · doi:10.1103/physrevlett.104.245704 · Cited by 50
Unifying approach for fluctuation theorems from joint probability distributions
García‐García, R., Domı́nguez, D., Lecomte, V., et al. (2010) · Physical Review E · doi:10.1103/physreve.82.030104 · Cited by 50
Intensive thermodynamic parameters in nonequilibrium systems
Bertin, É., Martens, K., Dauchot, O., et al. (2007) · Physical Review E · doi:10.1103/physreve.75.031120 · Cited by 49
Test of steady-state fluctuation theorem in turbulent Rayleigh-Bénard convection
Shang, X., Tong, P., & Xia, K. (2005) · Physical Review E · doi:10.1103/physreve.72.015301 · Cited by 49
Dynamic force spectroscopy of DNA hairpins. I. Force kinetics and free energy landscapesPreprint
Mossa, A., Mañosas, M., Forns, N., et al. (2012) · Cited by 49
Brownian motion: a paradigm of soft matter and biological physics
Frey, E., & Kroy, K. (2005) · Annalen der Physik · doi:10.1002/andp.200551701-303 · Cited by 49
Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality
West, D. K., Olmsted, P. D., & Paci, E. (2006) · The Journal of Chemical Physics · doi:10.1063/1.2393232 · Cited by 48
Nonequilibrium steady-state circulation and heat dissipation functional
Qian, H. (2001) · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics · doi:10.1103/physreve.64.022101 · Cited by 47
Monthus, C. (2011) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2011/03/p03008 · Cited by 47
Efficiency of molecular machines with continuous phase space
Golubeva, N., Imparato, A., & Peliti, L. (2012) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/97/60005 · Cited by 47
Changing the Mechanical Unfolding Pathway of FnIII10 by Tuning the Pulling Strength
Mitternacht, S., Luccioli, S., Torcini, A., et al. (2009) · Biophysical Journal · doi:10.1016/j.bpj.2008.09.043 · Cited by 47
Efficient extraction of free energy profiles from nonequilibrium experiments
Oberhofer, H., & Dellago, C. (2009) · Journal of Computational Chemistry · doi:10.1002/jcc.21290 · Cited by 47
Statistics of the dissipated energy in driven single-electron transitions
Averin, D. V., & Pekola, J. P. (2011) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/96/67004 · Cited by 46
Probability density functions of work and heat near the stochastic resonance of a colloidal particle
Imparato, A., Jop, P., Petrossian, A. R., et al. (2008) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2008/10/p10017 · Cited by 46
Entropy and Nonlinear Nonequilibrium Thermodynamic Relation for Heat Conducting Steady States
Komatsu, T. S., Nakagawa, N., Sasa, S.-I., et al. (2010) · Journal of Statistical Physics · doi:10.1007/s10955-010-0095-5 · Cited by 46
Tweed, A. (2002) · Physics Today · doi:10.1063/1.4796674 · Cited by 46
Universal optimal working cycles of molecular motors
Efremov, A. K., & Wang, Z. (2011) · Physical Chemistry Chemical Physics · doi:10.1039/c0cp02118k · Cited by 46
Dynamics of a tracer granular particle as a nonequilibrium Markov process
Puglisi, A., Visco, P., Trizac, E., et al. (2006) · Physical Review E · doi:10.1103/physreve.73.021301 · Cited by 46
Jarzynski Equality Modified in the Linear Feedback System
Fujitani, Y., & Suzuki, H. (2010) · Journal of the Physical Society of Japan · doi:10.1143/jpsj.79.104003 · Cited by 45
Work fluctuations for a harmonic oscillator driven by an external random force
Sabhapandit, S. (2011) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/96/20005 · Cited by 45
Wang, Y., & Tu, Z. C. (2012) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/98/40001 · Cited by 45
Onsager coefficients of a Brownian Carnot cycle
Izumida, Y., & Okuda, K. (2010) · The European Physical Journal B · doi:10.1140/epjb/e2010-00285-0 · Cited by 45
Asymptotics of work distributions in nonequilibrium systems
Engel, A. (2009) · Physical Review E · doi:10.1103/physreve.80.021120 · Cited by 45
Exactly solvable model illustrating far-from-equilibrium predictionsPreprint
Mazonka, O., & Jarzynski, C. (1999) · arXiv (Cornell University) · doi:10.48550/arxiv.cond-mat/9912121 · Cited by 44
Exact path-integral evaluation of the heat distribution function of a trapped Brownian oscillator
Chatterjee, D., & Cherayil, B. J. (2010) · Physical Review E · doi:10.1103/physreve.82.051104 · Cited by 44
Operation modes of the molecular motor kinesin
Liepelt, S., & Lipowsky, R. (2009) · Physical Review E · doi:10.1103/physreve.79.011917 · Cited by 44
Microrheology and the fluctuation theorem in dense colloids
Wilson, L. G., Harrison, A., Poon, W. C. K., et al. (2011) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/93/58007 · Cited by 44
Information and flux in a feedback controlled Brownian ratchet
Cao, F. J., Feito, M., & Touchette, H. (2008) · Physica A Statistical Mechanics and its Applications · doi:10.1016/j.physa.2008.10.006 · Cited by 44
On the work–Hamiltonian connection in manipulated systems
Peliti, L. (2008) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2008/05/p05002 · Cited by 44
Fluctuation-dissipation relations for Markov processes
Diezemann, G. (2005) · Physical Review E · doi:10.1103/physreve.72.011104 · Cited by 44
Gerritsma, E., & Gaspard, P. (2010) · Biophysical Reviews and Letters · doi:10.1142/s1793048010001214 · Cited by 43
Dynamic force spectroscopy of DNA hairpins: I. Force kinetics and free energy landscapes
Mossa, A., Mañosas, M., Forns, N., et al. (2009) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2009/02/p02060 · Cited by 43
Verley, G., Chétrite, R., & Lacoste, D. (2011) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2011/10/p10025 · Cited by 42
Heat flow in chains driven by thermal noise
Fogedby, H. C., & Imparato, A. (2012) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2012/04/p04005 · Cited by 42
Fluctuation Dissipation Relations in Stationary States of Interacting Brownian Particles under Shear
Krüger, M., & Fuchs, M. (2009) · Physical Review Letters · doi:10.1103/physrevlett.102.135701 · Cited by 42
Generalised Einstein relation for hot Brownian motion
Chakraborty, D., Gnann, M. V., Rings, D., Gläser, J., Otto, F., Cichos, F., & Kroy, K. (2011) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/96/60009 · Cited by 41
Optimum protocol for fast-switching free-energy calculations
Geiger, P., & Dellago, C. (2010) · Physical Review E · doi:10.1103/physreve.81.021127 · Cited by 41
Invariant Quantities in Shear Flow
Baule, A., & Evans, R. M. L. (2008) · Physical Review Letters · doi:10.1103/physrevlett.101.240601 · Cited by 41
On universality in ageing ferromagnets
Chatelain, C. (2004) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2004/06/p06006 · Cited by 41
The modified Sutherland–Einstein relation for diffusive non-equilibria
Baiesi, M., Maes, C., & Wynants, B. (2011) · Proceedings of the Royal Society A Mathematical Physical and Engineering Sciences · doi:10.1098/rspa.2011.0046 · Cited by 41
Fluctuation-Preserving Coarse Graining for Biochemical Systems
Altaner, B., & Vollmer, J. (2012) · Physical Review Letters · doi:10.1103/physrevlett.108.228101 · Cited by 40
Recovery of state-specific potential of molecular motor from single-molecule trajectory
Toyabe, S., Ueno, H., & Muneyuki, E. (2012) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/97/40004 · Cited by 40
Irreversible dynamics of a massive intruder in dense granular fluids
Sarracino, A., Villamaina, D., Gradenigo, G., et al. (2010) · Cited by 40
Application of the Hilbert-Huang transform to the search for gravitational waves
Camp, J., Cannizzo, J. K., & Numata, K. (2007) · Physical review. D. Particles, fields, gravitation, and cosmology/Physical review. D. Particles and fields · doi:10.1103/physrevd.75.061101 · Cited by 39
A bound particle coupled to two thermostats
Fogedby, H. C., & Imparato, A. (2011) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2011/05/p05015 · Cited by 39
Joint probability distributions and fluctuation theorems
García‐García, R., Lecomte, V., Kolton, A. B., et al. (2012) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2012/02/p02009 · Cited by 39
Steady-state balance conditions for molecular motor cycles and stochastic nonequilibrium processes
Liepelt, S., & Lipowsky, R. (2007) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/77/50002 · Cited by 39
Comment on “Failure of the Work-Hamiltonian Connection for Free-Energy Calculations”
Horowitz, J. M., & Jarzynski, C. (2008) · Physical Review Letters · doi:10.1103/physrevlett.101.098901 · Cited by 39
Boundary layers in stochastic thermodynamics
Aurell, E., Mejía-Monasterio, C., & Muratore-Ginanneschi, P. (2012) · Physical Review E · doi:10.1103/physreve.85.020103 · Cited by 38
The stochastic pump current and the non-adiabatic geometrical phase
Ohkubo, J. (2008) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2008/02/p02011 · Cited by 38
Nonequilibrium work distributions for a trapped Brownian particle in a time-dependent magnetic field
Saha, A., & Jayannavar, A. M. (2008) · Physical Review E · doi:10.1103/physreve.77.022105 · Cited by 38
Rings, D., Selmke, M., Cichos, F., et al. (2011) · Soft Matter · doi:10.1039/c0sm00854k · Cited by 38
Eulerian and Lagrangian Pictures of Non-equilibrium Diffusions
Chetrite, R., & Gawędzki, K. (2009) · Journal of Statistical Physics · doi:10.1007/s10955-009-9803-4 · Cited by 38
Buckling, stiffening, and negative dissipation in the dynamics of a biopolymer in an active medium
Kikuchi, N., Ehrlicher, A. J., Koch, D., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0900451106 · Cited by 38
Fluctuation Theorems for an Asymmetric Rotor in a Granular Gas
Joubaud, S., Lohse, D., & van der Meer, D. (2012) · Physical Review Letters · doi:10.1103/physrevlett.108.210604 · Cited by 38
Efficiency of Molecular Machines with Continuous Phase Space
Golubeva, N. (2012) · Cited by 38
Closed-loop control strategy with improved current for a flashing ratchet
Dinís, L., Parrondo, J. M. R., & Cao, F. J. (2005) · Europhysics Letters (EPL) · doi:10.1209/epl/i2005-10116-1 · Cited by 37
Lechner, W., & Dellago, C. (2007) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2007/04/p04001 · Cited by 37
Fluctuations of the total entropy production in stochastic systems
Joubaud, S., Garnier, N. B., & Ciliberto, S. (2008) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/82/30007 · Cited by 36
Experimental study of work exchange with a granular gas: The viewpoint of the Fluctuation Theorem
Naert, A. (2012) · Europhysics Letters (EPL) · doi:10.1209/0295-5075/97/20010 · Cited by 36
Fluctuation theorem for a double quantum dot coupled to a point-contact electrometer
Golubev, D. S., Utsumi, Y., Marthaler, M., et al. (2011) · Physical Review B · doi:10.1103/physrevb.84.075323 · Cited by 36
Bona fide stochastic resonance: a view point from stochastic energetics
Dan, D., & Jayannavar, A. M. (2004) · Physica A Statistical Mechanics and its Applications · doi:10.1016/j.physa.2004.05.069 · Cited by 36
Inertial Effects in Nonequilibrium Work Fluctuations by a Path Integral Approach
Taniguchi, T., & Cohen, E. G. D. (2007) · Journal of Statistical Physics · doi:10.1007/s10955-007-9398-6 · Cited by 35
Statistics of Entropy Production in Linearized Stochastic Systems
Turitsyn, K., Chertkov, M., Chernyak, V., et al. (2007) · Physical Review Letters · doi:10.1103/physrevlett.98.180603 · Cited by 35
Transient fluctuation relations for time-dependent particle transport
Altland, A., Martino, A. D., Egger, R., et al. (2010) · Physical Review B · doi:10.1103/physrevb.82.115323 · Cited by 35
Exactly Solvable Model for Driven Dissipative Systems
Shokef, Y., & Levine, D. (2004) · Physical Review Letters · doi:10.1103/physrevlett.93.240601 · Cited by 34
Generalized Einstein or Green-Kubo Relations for Active Biomolecular Transport
Seifert, U. (2010) · Physical Review Letters · doi:10.1103/physrevlett.104.138101 · Cited by 34
Self-citationFluctuation theorem for the flashing ratchet model of molecular motors
Lacoste, D., & Mallick, K. (2009) · Physical Review E · doi:10.1103/physreve.80.021923 · Cited by 34
Altaner, B., Großkinsky, S., Herminghaus, S., et al. (2012) · Physical Review E · doi:10.1103/physreve.85.041133 · Cited by 34
Comment on “Failure of the Work-Hamiltonian Connection for Free-Energy Calculations”
Peliti, L. (2008) · Physical Review Letters · doi:10.1103/physrevlett.101.098903 · Cited by 33
Nemoto, T., & Sasa, S. (2011) · Physical Review E · doi:10.1103/physreve.83.030105 · Cited by 33
Information and maximum power in a feedback controlled Brownian ratchet
Feito, M., & Cao, F. J. (2007) · The European Physical Journal B · doi:10.1140/epjb/e2007-00255-7 · Cited by 33
Dynamic force spectroscopy of DNA hairpins: II. Irreversibility and dissipation
Mañosas, M., Mossa, A., Forns, N., et al. (2009) · Journal of Statistical Mechanics Theory and Experiment · doi:10.1088/1742-5468/2009/02/p02061 · Cited by 33
Dynamic force spectroscopy of DNA hairpins. II. Irreversibility and dissipationPreprint
Mañosas, M., Mossa, A., Forns, N., et al. (2012) · Cited by 33
Measurement of work in single-molecule pulling experiments
Mossa, A., de Lorenzo, S., Huguet, J. M., et al. (2009) · The Journal of Chemical Physics · doi:10.1063/1.3155084 · Cited by 32
Injected power and entropy flow in a heated granular gas
Visco, P., Puglisi, A., Barrat, A., et al. (2005) · Europhysics Letters (EPL) · doi:10.1209/epl/i2005-10213-1 · Cited by 32
Escorted free energy simulations
Vaikuntanathan, S., & Jarzynski, C. (2011) · The Journal of Chemical Physics · doi:10.1063/1.3544679 · Cited by 32
Approximate thermodynamic structure for driven lattice gases in contact
Pradhan, P., Ramsperger, R., & Seifert, U. (2011) · Physical Review E · doi:10.1103/physreve.84.041104 · Cited by 32
Self-citationOut-of-Equilibrium Dynamics of Gene Expression and the Jarzynski Equality
Berg, J. (2008) · Physical Review Letters · doi:10.1103/physrevlett.100.188101 · Cited by 32
Joint probability distributions and fluctuation theorems
García‐García, R., Lecomte, V., Kolton, A. B., et al. (2012) · Americanae (AECID Library) · Cited by 32
Modeling an efficient Brownian heat engine
Asfaw, M. (2008) · The European Physical Journal B · doi:10.1140/epjb/e2008-00308-5 · Cited by 31
A field-theoretic approach to non-equilibrium work identities
Mallick, K., Moshe, M., & Orland, H. (2011) · Journal of Physics A Mathematical and Theoretical · doi:10.1088/1751-8113/44/9/095002 · Cited by 31
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Free energy transduction in a chemical motor model
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Faggionato, A., Daniele, & Pietro, D. (2016) · Cited by 21
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Ordering of limits in the Jarzynski equality
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Improving fast-switching free energy estimates by dynamical freezing
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Attard, P. (2009) · Annual Reports Section C (Physical Chemistry) · doi:10.1039/b802697c · Cited by 20
Irreversible models with Boltzmann–Gibbs probability distribution and entropy production
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Verley, G., Chétrite, R., & Lacoste, D. (2012) · Physical Review Letters · doi:10.1103/physrevlett.108.120601 · Cited by 20
Fluctuation-dissipation relations for nonequilibrium processes in open systems
Бочков, Г. Н., & Kuzovlev, Y. E. (1979) · Journal of Experimental and Theoretical Physics · Cited by 20
Fluctuation relation and heterogeneous superdiffusion in glassy transport
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Zimanyi, E. N., & Silbey, R. (2009) · The Journal of Chemical Physics · doi:10.1063/1.3132747 · Cited by 19
Work distributions for Ising chains in a time-dependent magnetic field
Einax, M., & Maass, P. (2009) · Physical Review E · doi:10.1103/physreve.80.020101 · Cited by 18
Hasegawa, H. (2011) · Physical Review E · doi:10.1103/physreve.84.051124 · Cited by 18
Faggionato, A., & Pietro, D. D. (2011) · Journal of Statistical Physics · doi:10.1007/s10955-011-0161-7 · Cited by 18
Fluctuations of energy flux in a simple dissipative out-of-equilibrium system
Falcón, C., & Falcon, É. (2009) · Physical Review E · doi:10.1103/physreve.79.041110 · Cited by 18
Work distribution functions for hysteresis loops in a single-spin system
Marathe, R., & Dhar, A. (2005) · Physical Review E · doi:10.1103/physreve.72.066112 · Cited by 18
Nonadiabatic entropy production for non-Markov dynamics
García‐García, R. (2012) · Physical Review E · doi:10.1103/physreve.86.031117 · Cited by 18
Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms
Wang, H. (2005) · Journal of Physics Condensed Matter · doi:10.1088/0953-8984/17/47/024 · Cited by 18
Research works printed but not linked: 27
- Bochkov G N, 1977, Sov. Phys.—JETP, 45, 125
- Bochkov G N, 1979, Sov. Phys.—JETP, 49, 543
- Maes C, 2003, Sém. Poincaré, 2, 29
- van den Broeck C Ebeling W Ulbricht H, 1985, Selforganization by Nonlinear Irreversible Processes Proc. 3rd Int. Conf., 57
- Merhav N, 2010, J. Stat. Mech., 2010
- Cohen E G D, 2004, J. Stat. Mech., 2004
- Chatterjee D, 2011, J. Stat. Mech., 2011
- Jimenez-Aquino J I, 2010, J. Phys. A: Math. Theor., 43
- Jimenez-Aquino J I, 2011, J. Phys. A: Math. Theor., 44
- Cohen E G D, 2008, J. Stat. Mech., 2008
- Zia R K P, 2007, J. Stat. Mech., 2007
- Monthus C, 2011, J. Stat. Mech., 2011
- Liu F, 2009, J. Phys. A: Math. Theor., 42
- Barato A C, 2012, J. Phys. A: Math. Theor., 45
- Cover T M, 2006, Telecommunications and Signal Processing
- Parrondo J M R, 2009, New J. Phys., 11
- Crooks G E, 2011, J. Stat. Mech., 2011
- Lahiri S, 2012, J. Phys. A: Math. Theor., 45
- Bauer M, 2012, J. Phys. A: Math. Theor., 45
- Munakata T, 2012, J. Stat. Mech.
- Gomez-Solano J R, 2011, J. Stat. Mech., 2011
- Schliwa M, 2003, Molecular Motors
- Lacoste D, 2010, Biological Physics. Poincaré Seminar 2009
- Ge H, 2012, J. Phys. A: Math. Theor., 45
- Zimmermann E, 2012, New J. Phys., 14
- Novikov I I, 1958, J. Nucl. Energy II, 7, 125
- Tu Z C, 2008, J. Phys. A: Math. Theor., 41
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Metadata
- Authors
- Seifert, U.
- Affiliations
- University of Stuttgart (DE)
- Corresponding author
- Seifert, Udo
- ORCID
- Seifert, Udo
- Venue
- Reports on Progress in Physics
- Publisher
- IOP Publishing
- Published
- 2012-11-20
- Volume
- 75
- Issue
- 12
- Pages
- 126001
- ISSN
- 0034-4885 (ISSN-L)
- 1361-6633
- OpenAlex
- W2102277728
- Cited by
- 3,300
- References
- 707
- Citations by year
- 2026: 258 · 2025: 302 · 2024: 267 · 2023: 260 · 2022: 274 · 2021: 310 · 2020: 290 · 2019: 261 · 2018: 225 · 2017: 192 · 2016: 210 · 2015: 192 · 2014: 145 · 2013: 85 · 2012: 27
- FWCI
- 5.66
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Reports on Progress in Physics (publishedVersion)
- PubMed (publishedVersion)
- arXiv (Cornell University) (submittedVersion)
- arXiv (Cornell University)
- Funders
- Deutsche Forschungsgemeinschaft
- European Social Fund
- Topics
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › Advanced Thermodynamics and Statistical Mechanics
- Physical Sciences › Engineering › Mechanical Engineering › Advanced Thermodynamic Systems and Engines
- Physical Sciences › Physics and Astronomy › Statistical and Nonlinear Physics › stochastic dynamics and bifurcation
- Keywords
- stochastic thermodynamics, fluctuation theorems, molecular machines, non-equilibrium thermodynamics, entropy production, heat and work, detailed balance, master equation, Langevin equation, nonequilibrium steady states, fluctuation-dissipation theorem, measurement-based feedback, efficiency at maximum power, molecular motors, heat engines, thermoelectric devices, single-electron transport, single-molecule assay, biochemical reaction networks
- MeSH terms
- Feedback, Hot Temperature, Models, Theoretical, Stochastic Processes, Thermodynamics, Molecular Motor Proteins
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