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In Vivo Analysis of Autophagy in Response to Nutrient Starvation Using Transgenic Mice Expressing a Fluorescent Autophagosome Marker
Abstract
Macroautophagy mediates the bulk degradation of cytoplasmic components. It accounts for the degradation of most long-lived proteins: cytoplasmic constituents, including organelles, are sequestered into autophagosomes, which subsequently fuse with lysosomes, where degradation occurs. Although the possible involvement of autophagy in homeostasis, development, cell death, and pathogenesis has been repeatedly pointed out, systematic in vivo analysis has not been performed in mammals, mainly because of a limitation of monitoring methods. To understand where and when autophagy occurs in vivo, we have generated transgenic mice systemically expressing GFP fused to LC3, which is a mammalian homologue of yeast Atg8 (Aut7/Apg8) and serves as a marker protein for autophagosomes. Fluorescence microscopic analyses revealed that autophagy is differently induced by nutrient starvation in most tissues. In some tissues, autophagy even occurs actively without starvation treatments. Our results suggest that the regulation of autophagy is organ dependent and the role of autophagy is not restricted to the starvation response. This transgenic mouse model is a useful tool to study mammalian autophagy.
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“The presence of yellow puncta suggests autophagic flux is being blocked by inhibition of lysosome fusion with the autophagosome74–77, and can be induced by the addition of autophagy blocker, Bafilomycin A1 (BAFA1) (Supplementary Fig. 8k).”
From GRAMD1B is a regulator of lipid homeostasis, autophagic flux and phosphorylated tau (2025) · cites this paper as [77]
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LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Kabeya, Y., Mizushima, N., Ueno, T., Yamamoto, A., Kirisako, T., Noda, T., Kominami, E., Ohsumi, Y., & Yoshimori, T. (2000) · The EMBO Journal · doi:10.1093/emboj/19.21.5720 · Cited by 6,605
Self-citationInduction of autophagy and inhibition of tumorigenesis by beclin 1
Liang, X. H., Jackson, S., Seaman, M., Brown, K., Kempkes, B., Hibshoosh, H., & Levine, B. (1999) · Nature · doi:10.1038/45257 · Cited by 3,347
Molecular dissection of autophagy: two ubiquitin-like systems
Ohsumi, Y. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35056522 · Cited by 1,240
Self-citationMizushima, N., Kuma, A., Kobayashi, Y., Yamamoto, A., Matsubae, M., Takao, T., Natsume, T., Ohsumi, Y., & Yoshimori, T. (2003) · Journal of Cell Science · doi:10.1242/jcs.00381 · Cited by 791
Self-citationNimmerjahn, F., Milosevic, S., Behrends, U., Jaffee, E. M., Pardoll, D. M., Bornkamm, G. W., & Mautner, J. (2003) · European Journal of Immunology · doi:10.1002/eji.200323730 · Cited by 359
Research works printed but not linked: 48
- Ariano, M.A., Armstrong, R.B., and Edgerton, V.R. (1973). Hindlimb muscle fiber populations of five mammals. J. Histochem. Cytochem. 21 , 51-55. · DOI
- Attaix, D. and Taillandier, D. (1998). The critical role of the ubiquitin-proteasome pathway in muscle wasting in comparison to lysosomal and Ca2+- dependent system . JAI Press Inc., London. · DOI
- Bendayan, M., Bruneau, A., and Morisset, J. (1985). Morphometrical and immunocytochemical studies on rat pancreatic acinar cells under control and experimental conditions. Biol. Cell 54 , 227-234. · DOI
- Bhat, S.P. (2001). The ocular lens epithelium. Biosci. Rep. 21 , 537-563. · DOI
- Blommaart, E.F.C., Luiken, J.J.F.P., and Meijer, A.J. (1997). Autophagic proteolysis: control and specificity. Histochem. J. 29 , 365-385. · DOI
- Bowen, I.D. and Lewis, G.H. (1980) Acid phosphatase activity and cell death in mouse thymus. Histochemistry 65 , 173-179. · DOI
- Brazil, M.I., Weiss, S., and Stockinger, B. (1997). Excessive degradation of intracellular protein in macrophages prevents presentation in the context of major histocompatibility complex class II molecules. Eur. J. Immunol. 27 , 1506-1514. · DOI
- Clarke, P.G. (1990). Developmental cell death: morphological diversity and multiple mechanisms. Anat. Embryol. (Berl.) 181 , 195-213. · DOI · Paper page
- Dahlmann, B., Rutschmann, M., and Reinauer, H. (1986). Effect of starvation or treatment with corticosterone on the amount of easily releasable myofilaments in rat skeletal muscles. Biochem. J. 234 , 659-664. · DOI
- de Waal, E.J., Vreeling-Sindelarova, H., Schellens, J.P., Houtkooper, J.M., and James, J. (1986). Quantitative changes in the lysosomal vacuolar system of rat hepatocytes during short-term starvation. A morphometric analysis with special reference to macro- and microautophagy. Cell Tissue Res. 243 , 641-648. · DOI
- Doelling, J.H., Walker, J.M., Friedman, E.M., Thompson, A.R., and Vierstra, R.D. (2002). The APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana. J. Biol. Chem. 277 , 33105-33114. · DOI
- Dunn, W.A.J. (1994). Autophagy and related mechanisms of lysosome-mediated protein degradation. Trends Cell Biol. 4 , 139-143. · DOI
- Frayn, K.N., and Maycock, P.F. (1979). Regulation of protein metabolism by a physiological concentration of insulin in mouse soleus and extensor digitorum longus muscles. Effects of starvation and scald injury. Biochem. J. 184 , 323-330. · DOI
- Hanaoka, H., Noda, T., Shirano, Y., Kato, T., Hayashi, H., Shibata, D., Tabata, S., and Ohsumi, Y. (2002). Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol. 129 , 1181-1193. · DOI
- Hershko, A., and Ciechanover, A. (1998). The ubiquitin system. Annu. Rev. Biochem. 67 , 425-479. · DOI · Paper page
- Hochstrasser, M. (1996). Ubiquitin-dependent protein degradation. Annu. Rev. Genet. 30 , 405-439. · DOI
- Ichimura, Y. et al. (2000). A ubiquitin-like system mediates protein lipidation. Nature 408 , 488-492. · DOI
- Juhasz, G., Csikos, G., Sinka, R., Erdelyi, M., and Sass, M. (2003). The Drosophila homolog of Aut1 is essential for autophagy and development. FEBS Lett. 543 , 154-158. · DOI
- Klionsky, D.J. et al. (2003). A unified nomenclature for yeast autophagy-related genes. Dev. Cell 5 , 539-545. · DOI
- Klionsky, D.J., and Ohsumi, Y. (1999). Vacuolar import of proteins and organelles from the cytoplasm. Annu. Rev. Cell Dev. Biol. 15 , 1-32. · DOI
- Kuma, A., Mizushima, N., Ishihara, N., and Ohsumi, Y. (2002). Formation of the ∼350 kD Apg12-Apg5·Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast. J. Biol. Chem. 277 , 18619-18625. · DOI
- Lechler, R., Aichinger, G., and Lightstone, L. (1996). The endogenous pathway of MHC class II antigen presentation. Immunol. Rev. 151 , 51-79. · DOI
- Li, J.B., and Goldberg, A.L. (1976). Effects of food deprivation on protein synthesis and degradation in rat skeletal muscles. Am. J. Physiol. Gastrointest. Liver Physiol. 231 , 441-448. · DOI
- Lindsten, K., Menendez-Benito, V., Masucci, M.G., and Dantuma, N.P. (2003). A transgenic mouse model of the ubiquitin/proteasome system. Nat. Biotechnol. 21 , 897-902. · DOI
- Melendez, A., Talloczy, Z., Seaman, M., Eskelinen, E.L., Hall, D.H., and Levine, B. (2003). Autophagy genes are essential for dauer development and life-span extension in C. elegans. Science 301 , 1387-1391. · DOI · Paper page
- Mizushima, N., Noda, T., and Ohsumi, Y. (1999). Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 18 , 3888-3896. · DOI
- Mizushima, N., Noda, T., Yoshimori, T., Tanaka, Y., Ishii, T., George, M.D., Klionsky, D.J., Ohsumi, M., and Ohsumi, Y. (1998a). A protein conjugation system essential for autophagy. Nature 395 , 395-398. · DOI
- Mizushima, N., Ohsumi, Y., and Yoshimori, T. (2002a). Autophagosome formation in mammalian cells. Cell Struct. Funct. 27 , 421-429. · DOI
- Mizushima, N., Sugita, H., Yoshimori, T., and Ohsumi, Y. (1998b). A new protein conjugation system in human. The counterpart of the yeast Apg12p conjugation system essential for autophagy. J. Biol. Chem. 273 , 33889-33892. · DOI
- Mizushima, N., Yamamoto, A., Hatano, M., Kobayashi, Y., Kabeya, Y., Suzuki, K., Tokuhisa, T., Ohsumi, Y., and Yoshimori, T. (2001). Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells. J. Cell Biol. 152 , 657-667. · DOI · Paper page
- Mizushima, N., Yoshimori, T., and Ohsumi, Y. (2002b). Mouse Apg10 as an Apg12 conjugating enzyme: analysis by the conjugation-mediated yeast two-hybrid method. FEBS Lett. 532 , 450-454. · DOI
- Mortimore, G.E., Hutson, N.J., and Surmacz, C.A. (1983). Quantitative correlation between proteolysis and macro- and microautophagy in mouse hepatocytes during starvation and refeeding. Proc. Natl. Acad. Sci. USA 80 , 2179-2183. · DOI
- Mortimore, G.E., and Pösö, A.R. (1987). Intracellular protein catabolism and its control during nutrient deprivation and supply. Annu. Rev. Nutr. 7 , 539-564. · DOI
- Nevalainen, T.J., and Janigan, D.T. (1974). Degeneration of mouse pancreatic acinar cells during fasting. Virchows Arch. B Cell Pathol. 15 , 107-118. · DOI
- Nishino, I. et al. (2000). Primary LAMP-2 deficiency causes X-linked vacuolar cardiomyopathy and myopathy (Danon disease). Nature 406 , 906-910. · DOI · Paper page
- Niwa, H., Yamamura, K., and Miyazaki, J. (1991). Efficient selection for high-expression transfectants with a novel eukaryotic vector. Gene 108 , 193-199. · DOI
- Noda, T., Suzuki, K., and Ohsumi, Y. (2002). Yeast autophagosomes: de novo formation of a membrane structure. Trends Cell Biol. 12 , 231-235. · DOI
- Okabe, M., Ikawa, M., Kominami, K., Nakanishi, T., and Nishimune, Y. (1997). `Green mice' as a source of ubiquitous green cells. FEBS Lett. 407 , 313-319. · DOI · Paper page
- Otto, G.P., Wu, M.Y., Kazgan, N., Anderson, O.R., and Kessin, R.H. (2003). Macroautophagy is required for multicellular development of the social amoeba Dictyostelium discoideum. J. Biol. Chem. 278 , 17636-17645. · DOI · Paper page
- Seglen, P.O., and Bohley, P. (1992). Autophagy and other vacuolar protein degradation mechanisms. Experientia 48 , 158-172. · DOI
- Suzuki, K., Kirisako, T., Kamada, Y., Mizushima, N., Noda, T., and Ohsumi, Y. (2001). The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation. EMBO J. 20 , 5971-5981. · DOI
- Tanida, I., Tanida-Miyake, E., Komatsu, M., Ueno, T., and Kominami, E. (2002). Human Apg3p/Aut1p homologue is an authentic E2 enzyme for multiple substrates, GATE-16, GABARAP, and MAP-LC3, and facilitates the conjugation of hApg12p to hApg5p. J. Biol. Chem. 277 , 13739-13744. · DOI
- Tanida, I., Tanida-Miyake, E., Ueno, T., and Kominami, E. (2001). The human homolog of Saccharomyces cerevisiae Apg7p is a protein-activating enzyme for multiple substrates including human Apg12p, GATE-16, GABARAP, and MAP-LC3. J. Biol. Chem. 276 , 1701-1706. · DOI
- Tsukada, M., and Ohsumi, Y. (1993). Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae. FEBS Lett. 333 , 169-174. · DOI
- van Leyen, K., Duvoisin, R.M., Engelhardt, H., and Wiedmann, M. (1998). A function for lipoxygenase in programmed organelle degradation. Nature 395 , 392-395. · DOI
- Vary, T.C., and Kimball, S.R. (1992). Sepsis-induced changes in protein synthesis: differential effects on fast- and slow-twitch muscles. Am. J. Physiol. 262 , C1513-C1519. · DOI
- Walton, J., and McAvoy, J. (1984). Sequential structural response of lens epithelium to retina-conditioned medium. Exp. Eye Res. 39 , 217-229. · DOI
- 10.1091/mbc.11.2.747 · DOI
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Metadata
- Authors
- Mizushima, N., Yamamoto, A., Matsui, M., Yoshimori, T., & Ohsumi, Y.
- Affiliations
- Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan
- Department of Bio-Science, Nagahama Institute of Bio-Science and Technology, Nagahama, Shiga 526-0829, Japan
- CREST, Japan Science and Technology Agency, Kawaguchi 332-0012, Japan
- Venue
- Molecular Biology of the Cell
- Published
- 2004-03
- Volume
- 15
- Issue
- 3
- Pages
- 1101-1111
- ISSN
- 1059-1524
- 1939-4586
- Cited by
- 2,105
- References
- 5
- Language
- en
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