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Opportunities and challenges for ChatGPT and large language models in biomedicine and health
Open accessAbstract
ChatGPT has drawn considerable attention from both the general public and domain experts with its remarkable text generation capabilities. This has subsequently led to the emergence of diverse applications in the field of biomedicine and health. In this work, we examine the diverse applications of large language models (LLMs), such as ChatGPT, in biomedicine and health. Specifically, we explore the areas of biomedical information retrieval, question answering, medical text summarization, information extraction and medical education and investigate whether LLMs possess the transformative power to revolutionize these tasks or whether the distinct complexities of biomedical domain presents unique challenges. Following an extensive literature survey, we find that significant advances have been made in the field of text generation tasks, surpassing the previous state-of-the-art methods. For other applications, the advances have been modest. Overall, LLMs have not yet revolutionized biomedicine, but recent rapid progress indicates that such methods hold great potential to provide valuable means for accelerating discovery and improving health. We also find that the use of LLMs, like ChatGPT, in the fields of biomedicine and health entails various risks and challenges, including fabricated information in its generated responses, as well as legal and privacy concerns associated with sensitive patient data. We believe this survey can provide a comprehensive and timely overview to biomedical researchers and healthcare practitioners on the opportunities and challenges associated with using ChatGPT and other LLMs for transforming biomedicine and health.
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“Prompt engineering improves chatbot performance by tailoring LLM output to be focused and helpful for a specific task.162,163”
From Large Language Models for Chatbot Health Advice Studies: A Systematic Review (2025) · cites this paper as [162]
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Vaswani, A., Shazeer, N., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A. N., Kaiser, L., & Polosukhin, I. (2017) · arXiv · doi:10.48550/arxiv.1706.03762 · Cited by 120,404
The PRISMA 2020 statement: An updated guideline for reporting systematic reviews
Page, M. J., McKenzie, J. E., Bossuyt, P. M., Boutron, I., Hoffmann, T. C., Mulrow, C. D., Shamseer, L., Tetzlaff, J. M., Akl, E. A., Brennan, S. E., et al. (2021) · BMJ · doi:10.1136/bmj.n71 · Cited by 108,283
Advances in neural information processing systems 7
(1996) · Computers & Mathematics with Applications · doi:10.1016/s0898-1221(96)90463-0 · Cited by 14,759
Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer
Raffel, C., Shazeer, N., Roberts, A., Lee, K., Narang, S., Matena, M., Zhou, Y., Li, W., & Liu, P. J. (2019) · arXiv · doi:10.48550/arxiv.1910.10683 · Cited by 10,929
The PRISMA 2020 statement: an updated guideline for reporting systematic reviews
Page, M. J., McKenzie, J., Bossuyt, P., Boutron, I., Hoffmann, T., mulrow, C., Shamseer, L., Tetzlaff, J., Akl, E., Brennan, S. E., et al. (2020) · doi:10.31222/osf.io/v7gm2_v1 · Cited by 8,090
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Lee, J., Yoon, W., Kim, S., Kim, D., Kim, S., So, C. H., & Kang, J. (2020) · Bioinformatics · doi:10.1093/bioinformatics/btz682 · Cited by 7,218
Dissecting racial bias in an algorithm used to manage the health of populations
Obermeyer, Z., Powers, B., Vogeli, C., & Mullainathan, S. (2019) · Science · doi:10.1126/science.aax2342 · Cited by 7,137 · cited 1×
“Unfair and biased model in the biomedical and health domain can lead to detrimental outcomes and affect the quality of treatment a patient receives [115-117].”
BackgroundThe PRISMA 2020 statement: an updated guideline for reporting systematic reviews
Page, M. J., McKenzie, J., Bossuyt, P., Boutron, I., Hoffmann, T., mulrow, C., Shamseer, L., Tetzlaff, J., Akl, E., Brennan, S. E., et al. (2020) · doi:10.31222/osf.io/v7gm2 · Cited by 5,177
Survey of Hallucination in Natural Language Generation
Ji, Z., Lee, N., Frieske, R., Yu, T., Su, D., Xu, Y., Ishii, E., Bang, Y. J., Madotto, A., & Fung, P. (2023) · ACM Computing Surveys · doi:10.1145/3571730 · Cited by 5,025 · cited 1×
“To address the hallucination issue [65] in medical QA systems, one of the current solutions is retrieval augmentation, which refers to the approach of combining LLMs with a search system, such as the New Bing for the general domain and Almanac [66] in the clinical domain.”
MethodChain-of-Thought Prompting Elicits Reasoning in Large Language Models
Wei, J., Wang, X., Schuurmans, D., Bosma, M., Ichter, B., Xia, F., Chi, E., Le, Q., & Zhou, D. (2022) · arXiv · doi:10.48550/arxiv.2201.11903 · Cited by 4,263
Research works printed but not linked: 32
- OpenAI, 2022, Introducing ChatGPT
- OpenAI, 2023, GPT-4 Technical Report
- Bolton, 2022, BioMedLM: a Domain-Specific Large Language Model for Biomedical Text
- Wu, 2023, PMC-LLaMA: Further Finetuning LLaMA on Medical Papers
- Radford, 2018, Improving Language Understanding by Generative Pre-Training
- Radford, 2019, OpenAI Research Papers
- Chowdhery, 2022, et al
- Taylor, 2022, et al
- Touvron, 2023, et al
- Toma, 2023, Clinical Camel: An Open-Source Expert-Level Medical Language Model with Dialogue-Based Knowledge Encoding
- Li, 2023, ChatDoctor: A Medical Chat Model Fine-tuned on LLaMA Model using Medical Domain Knowledge
- Anil R, Dai AM, Firat O, 2023, PaLM 2 Technical Report
- Abacha, 2019, MEDINFO 2019: Health and Wellbeing e-Networks for All, 25
- Kanoulas, 2018, CEUR Workshop Proceedings
- Kanoulas, 2019, CEUR Workshop Proceedings
- Hou, 2023, GeneTuring tests GPT models in genomics, 10.1101/2023.03.11.532238 · DOI
- Fox, 2013, Pew Research Center Blog Post
- Cohan, 2018, Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies
- Laundry, 2023, Turn GPT-4 Into your Personal Literature Review Bot. The Academic’s Field Guide to Writing Code Blog Post on Medium
- Smit, 2020, et al
- Wang, 2023, et al
- Tang, 2023, npj Digit Med
- Luo, Bioinformatics
- Krallinger, 2017, Proceedings of the sixth BioCreative Challenge Evaluation Workshop
- Chen, 2023, Large Language Models in Biomedical Natural Language Processing: Benchmarks, Baselines, and Recommendations
- OpenAI, 2023, Educator considerations for ChatGPT
- Gasperin, 2007, Proceedings of DAARC
- Su, Dagstuhl Seminar Proceedings
- Batista-Navarro, Proceedings of BioNLP 2011 Workshop
- OpenAI, 2023, GPT-4 System Card
- Papineni, Proceedings of the 40th Annual Meeting of the Association for Computational Linguistics
- Lin, Text Summarization Branches Out
Cited by
Sorted by citations
Large language models in healthcare and medical domain: A review
Nazi, Z. A., & Peng, W. (2024) · Informatics · doi:10.3390/informatics11030057 · Cited by 415
Current applications and challenges in large language models for patient care: a systematic review
Busch, F., Hoffmann, L., Rueger, C., van Dijk, E. H., Kader, R., Ortiz-Prado, E., Makowski, M. R., Saba, L., Hadamitzky, M., Kather, J. N., et al. (2025) · Communications Medicine · doi:10.1038/s43856-024-00717-2 · Cited by 358
Improving large language models for clinical named entity recognition via prompt engineering
Hu, Y., Chen, Q., Du, J., Peng, X., Keloth, V. K., Zuo, X., Zhou, Y., Li, Z., Jiang, X., Lu, Z., et al. (2024) · Journal of the American Medical Informatics Association · doi:10.1093/jamia/ocad259 · Cited by 314
Self-citationA systematic review of large language models and their implications in medical education
Lucas, H. C., Upperman, J. S., & Robinson, J. R. (2024) · Medical Education · doi:10.1111/medu.15402 · Cited by 287
Matching patients to clinical trials with large language models
Jin, Q., Wang, Z., Floudas, C. S., Chen, F., Gong, C., Bracken-Clarke, D., Xue, E., Yang, Y., Sun, J., & Lu, Z. (2024) · Nature Communications · doi:10.1038/s41467-024-53081-z · Cited by 287
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Metadata
- Authors
- Tian, S., Jin, Q., Yeganova, L., Lai, P.-T., Zhu, Q., Chen, X., Yang, Y., Chen, Q., Kim, W., Comeau, D. C., Islamaj, R., Kapoor, A., Gao, X., & Lu, Z.
- Affiliations
- United States National Library of Medicine (US)
- King Abdullah University of Science and Technology (SA)
- Corresponding author
- Lu, Zhiyong
- ORCID
- Venue
- Briefings in Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2023-11-22
- Volume
- 25
- Issue
- 1
- ISSN
- 1467-5463 (ISSN-L)
- 1477-4054
- PMC
- PMC10762511
- OpenAlex
- W4381587418
- Cited by
- 359
- References
- 132
- Citations by year
- 2026: 81 · 2025: 161 · 2024: 112 · 2023: 5
- FWCI
- 14.34
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- public-domain
- Locations
- Briefings in Bioinformatics (publishedVersion, public-domain)
- PubMed Central (publishedVersion, public-domain)
- PubMed (publishedVersion)
- arXiv (Cornell University) (submittedVersion, cc-by)
- PubMed Central (submittedVersion, cc-by)
- arXiv (Cornell University) (cc-by)
- Funders
- NIH Intramural Research Program
- National Library of Medicine
- National Institutes of Health (1K99LM014024)
- Topics
- Health Sciences › Medicine › Health Informatics › Artificial Intelligence in Healthcare and Education
- Health Sciences › Medicine › Health Informatics › Biomedical Text Mining and Ontologies
- Physical Sciences › Computer Science › Artificial Intelligence › Topic Modeling
- Keywords
- ChatGPT, large language models, biomedical information retrieval, question answering, medical text summarization, information extraction, medical education, patient data privacy, legal issues, text generation
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