The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
TROLL—Tandem Repeat Occurrence Locator
Abstract
Summary: Tandem Repeat Occurrence Locator (TROLL), is a light-weight Simple Sequence Repeat (SSR) finder based on a slight modification of the Aho–Corasick algorithm. It is fast and only requires a standard Personal Computer (PC) to operate. We report running times of 127 s to find all SSRs of length 20 bp or more on the complete Arabdopsis genome—approx. 130 Mbases divided in five chromosomes—using a PC Athlon 650 MHz with 256 MB of RAM. Availability: TROLL is an open source project and is available at http://finder.sourceforge.net. Contact: castelo@capsl.udel.edu
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Citations
Cites
Tandem repeats finder: a program to analyze DNA sequences
Benson, G. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.2.573 · Cited by 9,374
Cited by
Repbase Update, a database of eukaryotic repetitive elements
Jurka, J., Kapitonov, V. V., Pavlicek, A., Klonowski, P., Kohany, O., & Walichiewicz, J. (2005) · Cytogenetic and Genome Research · doi:10.1159/000084979 · Cited by 3,370
MISA-web: a web server for microsatellite prediction
Beier, S., Thiel, T., Münch, T., Scholz, U., & Mascher, M. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx198 · Cited by 2,628
Microsatellite markers: what they mean and why they are so useful
Vieira, M. L. C., Santini, L., Diniz, A. L., & Munhoz, C. D. F. (2016) · Genetics and Molecular Biology · doi:10.1590/1678-4685-gmb-2016-0027 · Cited by 837
GMATA: An Integrated Software Package for Genome-Scale SSR Mining, Marker Development and Viewing
Wang, X., & Wang, L. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.01350 · Cited by 283
Mining microsatellites in eukaryotic genomes
Sharma, P. C., Grover, A., & Kahl, G. (2007) · Trends in Biotechnology · doi:10.1016/j.tibtech.2007.07.013 · Cited by 257
Metadata
- Authors
- Castelo, A. T., Martins, W., & Gao, G. R.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-04-01
- Volume
- 18
- Issue
- 4
- Pages
- 634-636
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2108350018
- Cited by
- 212
- References
- 1
- FWCI
- 3.13
- Type
- journal article
- Language
- en
- Open access
- closed
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- Castelo, A. T., Martins, W., & Gao, G. R. (2002). TROLL—Tandem Repeat Occurrence Locator. Bioinformatics. https://doi.org/10.1093/bioinformatics/18.4.634
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
