The DOI matches its Crossref record; 12 of the 12 references it cites were found in a registry or an index.
MISA-web: a web server for microsatellite prediction
Open accessAbstract
Motivation: Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. Results: We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. Availability and Implementation: MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code.
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Cites
Tandem repeats finder: a program to analyze DNA sequences
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Self-citationForensic DNA Typing: Biology, Technology, and Genetics of STR Markers
Butler, J. M. (2005) · Cited by 716
mreps: efficient and flexible detection of tandem repeats in DNA
Kolpakov, R. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg617 · Cited by 397
SciRoKo: a new tool for whole genome microsatellite search and investigation
Kofler, R., Schlötterer, C., & Lelley, T. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm157 · Cited by 340
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IMEx: Imperfect Microsatellite Extractor
Mudunuri, S. B., & Nagarajaram, H. A. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm097 · Cited by 215
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GMATo: A novel tool for the identification and analysis of microsatellites in large genomes
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Cited by
CPGAVAS2, an integrated plastome sequence annotator and analyzer
Shi, L., Chen, H., Jiang, M., Wang, L., Wu, X., Huang, L., & Liu, C. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz345 · Cited by 1,249
Wang, X., Yang, S., Chen, Y., Zhang, S., Zhao, Q., Li, M., Gao, Y., Yang, L., & Bennetzen, J. L. (2018) · BMC Genomics · doi:10.1186/s12864-018-4878-4 · Cited by 56
Zhu, Y., Zhang, X., Yan, S., Feng, C., Wang, D., Yang, W., Daud, M. K., Xiang, J., & Mei, L. (2023) · Plasmid · doi:10.1016/j.plasmid.2023.102670 · Cited by 24
Zhang, H., Xu, W., Chen, H., Chen, J., Liu, X., Chen, X., & Yang, S. (2021) · BMC Genomic Data · doi:10.1186/s12863-021-00989-w · Cited by 15
Metadata
- Authors
- Beier, S., Thiel, T., Münch, T., Scholz, U., & Mascher, M.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2017-04-07
- Volume
- 33
- Issue
- 16
- Pages
- 2583-2585
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2605276928
- Cited by
- 2,628
- References
- 12
- FWCI
- 37.64
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Beier, S., Thiel, T., Münch, T., Scholz, U., & Mascher, M. (2017). MISA-web: a web server for microsatellite prediction. Bioinformatics. https://doi.org/10.1093/bioinformatics/btx198
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