Dream: powerful differential expression analysis for repeated measures designs

Cited by (330)

Items 301–330 of 330

1. Temporal multi-omic profiling of immune, gut, and microbiome responses to ischemic stroke reveals convergence of host and microbial perturbations one week after brain injury
   Junjie Guan, Burak Kizil, Garima Kalakoti, Delf-Magnus Kummerfeld, Oleksii Doroshenko, Vanesa Pelcastre-Neri, Nadine Chiara Frigger, Emilio Cirri, Nadine Pömpner, Manisha Goyal et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
2. Immune activation during broadly neutralizing antibody-mediated HIV suppression prior to post-intervention control
   Julia A. Wagner, Demi A. Sandel, Ravi K. Patel, George W. Gruenhagen, Rafael Tibúrcio, Shalyeen S. Singh, Kaiti Schwartz, Michela Traglia, Pamela Milani, Clara Di Germanio et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
3. Cell-specific regulatory circuits connect genetic variation to disease susceptibility
   Roy Oelen, Maryna Korshevniuk, Jelmer Niewold, Dan Kaptijn, Martijn van der Werff, Marc Jan Bonder, Lude Franke, Monique G.P. van der Wijst · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
4. Beta-Adrenergic Stimulation and MYH7 G256E Mutant Gene Dosage Drive Hypertrophic Cardiomyopathy Phenotype Penetrance
   Paul V. Heinrich, Raina M. Jung, Jonathan Samuel Achter, Vincent X. Nguyen, Carissa Lee, Carolin Sailer, Henna Domian, Alison Schroer Vander Roest, Fabian Patrik Suchy, James W.S. Jahng et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
5. Scalable generation of pure CD103+ cDC1 from iDC1 cultures
   S.K. Sharma, Fiona Flynn, Brian J. Capaldo, Ronald J. Holewinski, Qingrong Chen, Daoud M. Meerzaman, Þorkell Andrésson, Christian T. Mayer · 2026
6. Impact of interspecies colostrum and milk replacement on circulating sncRNA dynamics of neonatal goat kids
   Rob J. Dekker, Marielle H. van den Esker, Lars Ravesloot, Wim C. de Leeuw, Marina F van Olst, Martijs J. Jonker, Timo M. Breit, Ad P. Koets · 2026 · RNA Biology
7. MicroRNAs Regulated by Pregnancy Target Antiviral and Cancer Immunity Overlapping with the HIV Interactome
   Paula Fernandes Tavares Cezar de Mello, Jonathan M. Dreyfuss, Pai‐Lien Chen, Hidemi S. Yamamoto, Xiaoming Gao, Hui Pan, Charles Morrison, Gustavo F. Doncel, Robert L. Barbieri, Raina Nakova Fichorova · 2026 · Viruses
8. SARS-CoV-2 infection produces an IL-33–dependent chronic eosinophilic pneumonia and muco-inflammatory airways disease in Scnn1b-Tg mice
   Padraig Hawkins, Sarah R. Leist, Hong Dang, Minako Saito, Lisa C. Morton, Jesse B. Hines, Rodney C. Gilmore, Stephen A. Schworer, E F Burns, Jason R. Rock et al. · 2026 · JCI Insight
9. Reduced LACTB expression in myeloid cells is associated with elevated succinylcarnitine and reduced Alzheimer’s disease risk
   Alison Goate, Carmen Romero‐Molina, Ruben Gomez‐Gutierrez, Wen Yi See, Tulsi Patel, Hayk Davtyan, Jiacheng Ma, Quanyun Alan Xu, Michael Sewell, Kendra L. Allton et al. · 2026 · Research Square
10. Time-dependent effects of rapid-acting antidepressants in iPSC-derived neurons from treatment-resistant depression and healthy volunteers
    Jenessa N. Johnston, Gregory H. Jones, Shiyong Peng, Peixiong Yuan, Mani Yavi, Bashkim Kadriu, Ioline D. Henter, Brandi Quintanilla, Abdel G. Elkahloun, Ruin Moaddel et al. · 2026 · Molecular Psychiatry
11. Convergent neuroimmune signaling underlying rapid antidepressant response to ketamine and psychedelics
    Gregory H. Jones, Jessica R. Gilbert, Jenessa N. Johnston, Nirmala Akula, Anton Schulmann, Miranda H. Arakelian, Shiyong Peng, Peixiong Yuan, Ewurakua A. Winful, Mani Yavi et al. · 2026 · Molecular Psychiatry
12. Pathogen priming reveals host immune training and microbiome conditioning in corals
    Matteo Monti, Neus Garcías-Bonet, Francisca C García, Érika P. Santoro, Ghaida M. Aljuaid, Kevin Schuster, Chakkiath Paul Antony, Marco Casartelli, Laura Beenham, Aurora Giorgi et al. · 2026 · ISME Host Microbe
13. Soil-plant microbiomes shaped by soil type and wastewater quality as shown by a combination of cultivation-dependent and independent techniques
    Sara Gallego, Leila Soufi, Ioannis D. Kampouris, Rehana Abdulvakkeil, Dipen Pulami, Kathia Lüneberg, Benjamin Justus Heyde, Doreen Babin, Christina Siebe, Jan Siemens et al. · 2026 · FEMS Microbiology Ecology
14. Transcriptomic responses associated with heat resilience in beef cattle
    Eduardo Rodrı́guez, Ashley Beard, Camila Santos Rojas, Gabriel A Zayas, Fahad Rafiq, Raluca G. Mateescu, Fernanda Marcondes de Rezende · 2026 · Scientific Reports
15. Durable Interferon‐Linked Blood Signatures During COVID‐19 Convalescence
    Alexander Ferrena, Florencia Schlamp, Michael Tuen, Ralf Duerr, Marie Samanovic-Golden, Mark J. Mulligan, Tessa J. Barrett · 2026 · Journal of Medical Virology
16. Atopic dermatitis remission and recurrence are preceded by changes in ex-tissue-resident memory T cell abundance
    Treasa Jiang, April Rose Foster, Anna Vathrakokoili Pournara, Lloyd Steele, Madiha Shabbir, Emily Smith, Kim Evans, Tom Baxter, Kyle Diddams, Lily Wright et al. · 2026 · medRxiv
17. Safety and Biomarker Analysis of NRG-LU004: Phase I Trial of Accelerated or Conventionally Fractionated Radiation Therapy Combined With Durvalumab in Programmed Death Ligand-1–High Locally Advanced Non-small Cell Lung Cancer
    Steven Hsesheng Lin, Stephanie L. Pugh, Diane Marie Del Valle, Vladimir Roudko, Martin Joseph Edelman, Anthony Doemer, Charles B. Simone, Kai Nie, Tia Rizakos, Alisha Mugunthan et al. · 2026 · International Journal of Radiation Oncology*Biology*Physics
18. Integrated Bulk and Single-Nucleus Transcriptomics Characterizes the Developmental and Regional Specialization of Chicken Abdominal Fat-Associated Tissue
    Siyu Zhang, Qihong Zhang, Jiali Wang, Zhenhui Li · 2026 · Animals
19. Morphological and Transcriptomic Responses of Three Intestinal Segments Following the Replacement of 50% of Dietary Soybean Meal with Walnut Cake in Finishing Large Diqing Tibetan Pigs
    Kang Zhang, Lixing Wang, Xinpeng Li, S H Li, Chuhuan Zhou, Yin Xu, Dawei Yan, Xinxing Dong · 2026 · Biology
20. A Community-Driven Single-Cell PBMC Reference Integrating Landmark Datasets Spanning Health and Disease
    Ana-Maria Cujba, Sergio Aguilar-Fernández, Adrien Antoinette, Wamia Said, Michaela Müller, Kian Hong Kock, Jacquelyn Nestor, Radhika Sonthalia, Eliora Violain Buyamin, Pragya Rawat et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
21. Maternal immune gene expression trajectories and dynamic genetic regulation throughout pregnancy
    Sophie Hoffman, Katie L. Burnham, Emma Cook, Céleste E. Cohen, Ulla Sovio, David S. Jones, Gordon C. S. Smith, Emma E. Davenport · 2026 · medRxiv
22. Prehabilitative Exercise Mitigates Immobilization-Induced Atrophy Through Muscle Reserve Rather Than Resistance to Disuse: The PRE-EX Randomized Controlled Trial
    Casper Soendenbroe, Sara Dietz Pedersen, Leonard Pulevic, Amanda El Khoury, Helena L. Christiansen, Frederik Hvid Linden, René B. Svensson, Stig Peter Magnusson, Peter Schjerling, Michael Kjær et al. · 2026 · medRxiv
23. Proteome signatures in ICU patients with COVID-19 and acute brain dysfunction: an observational cohort study
    Andreas Edel, Jayanth Sreekanth, Florian Kurth, Markus Ralser, Vadim Demichev, Michael Mülleder, Eric Blanc, Claudia Spies · 2026 · Scientific Reports
24. Multi-Tissue Transcriptomic Profiles of Tarim and Tianshan Red Deer Under Common Conditions
    Xilai Zhao, Nursat Turxunjan, Xu Zhou, Xinlong Hao, Xiaowei Jia, Linzhi Yan, Miaohua Wang, Zhen Li, Wenxi Qian · 2026 · Veterinary Sciences
25. Multi-omic profiling of 85 iPSC lines from familial dementia reveals cellular diversity and regulators of organoid development
    Le Qi, Taylor B. Bertucci, Susan M. Borden, Brigitte L. Arduini, Steven Lotz, Kathryn R. Bowles, Alison Goate, Celeste M M. Karch, Sally Temple, Daniel H. Geschwind · 2026 · Neuron
26. Cellular Senescence Dysregulates Antiviral Interferon Responses in Idiopathic Pulmonary Fibrosis
    Jun‐Wei B. Hughes, Yasmina Reisser, Franziska Hornung, Tyler A. U. Hilsabeck, Fiona Senchyna, Ana L. Coelho, Tsung Che Ho, Kevin Schneider, David Furman, Cory M. Hogaboam et al. · 2026 · Aging Cell
27. Large-scale integrated single-cell analysis reveals molecular subtypes and microenvironmental remodeling in cutaneous T cell lymphoma
    Ryan J. Reis, Eric Mou, Vincent Liu, Patrick Manfred Brunner, Nicholas C. Borcherding, Ali Jabbari · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
28. innate immune responses to AS03 adjuvanted vs. non-adjuvanted H5N1 vaccine
    Shira Perl · 2024 · ImmPort
29. Breed-dependent cecal microbiota restructuring tracks production outcomes across commercial broiler antimicrobial feeding programs
    Wen Chen, Dion Lepp, Ashley Brott, Lindsey Clairmont, Lisa Bean-Hodgins, Elijah G. Kiarie, Moussa S. Diarra · 2026 · Poultry Science
30. Effect of upadacitinib and ABBV-599 on biomarkers in SLE: results from the phase 2 SLEek study
    Marie‐Claude Gaudreau, Michelle D. Catalina, Thierry Sornasse, Archana Iyer, Ioan Filip, Shalina Contrepois, James Fann, Joan T. Merrill · 2026 · Lupus Science & Medicine