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Distinct transcriptional alterations distinguish Lewy body disease from Alzheimer’s disease

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Acute and persistent responses after H5N1 vaccination in humans

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Atlas of genetic effects in human microglia transcriptome across brain regions, aging and disease pathologies

Lopes, K. P., Snijders, G. J. L., Humphrey, J., de Witte, L. D., & Raj, T. (2021) · Alzheimer s & Dementia · doi:10.1002/alz.050942 · Cited by 17 · see citing works

A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data

Li, H., Zhu, B., Xu, Z., Adams, T. S., Kaminski, N., & Zhao, H. (2021) · BMC Bioinformatics · doi:10.1186/s12859-021-04412-0 · Cited by 14 · see citing works

Exposure to the Amino Acids Histidine, Lysine, and Threonine Reduces mTOR Activity and Affects Neurodevelopment in a Human Cerebral Organoid Model

van Berlekom, A. B., Kübler, R., Hoogeboom, J. W., Vonk, D., Sluijs, J. A., Pasterkamp, R. J., Middeldorp, J., Kraneveld, A. D., Garssen, J., Kahn, R. S., et al. (2022) · Nutrients · doi:10.3390/nu14102175 · Cited by 14 · see citing works

Adaptive structural and functional evolution of the placenta protects fetal growth in high-elevation deer mice

Wilsterman, K., Moore, E. C., Schweizer, R. M., Cunningham, K., Good, J. M., & Cheviron, Z. A. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2218049120 · Cited by 14 · see citing works

Computational analysis of serum-derived extracellular vesicle miRNAs in juvenile sheep model of single stage Fontan procedure

Park, H., Kelly, J. M., Hoffman, J. R., Takaesu, F., Schwartzman, W. E., Ulziibayar, A., Kitsuka, T., Heuer, E. D., Yimit, A., Malbrue, R. A., et al. (2022) · Extracellular Vesicle · doi:10.1016/j.vesic.2022.100013 · Cited by 13 · see citing works

The transcriptome from asexual to sexual in vitro development of Cystoisospora suis (Apicomplexa: Coccidia)

Bustos, T. C., Feix, A. S., Lyrakis, M., Dolezal, M., Ruttkowski, B., & Joachim, A. (2022) · Scientific Reports · doi:10.1038/s41598-022-09714-8 · Cited by 13 · see citing works

Personalized Dietary Advice to Increase Protein Intake in Older Adults Does Not Affect the Gut Microbiota, Appetite or Central Processing of Food Stimuli in Community-Dwelling Older Adults: A Six-Month Randomized Controlled Trial

Fluitman, K. S., Wijdeveld, M., Davids, M., van Ruiten, C. C., Reinders, I., Wijnhoven, H. A. H., Keijser, B. J. F., Visser, M., Nieuwdorp, M., & IJzerman, R. G. (2023) · Nutrients · doi:10.3390/nu15020332 · Cited by 13 · see citing works

Transcriptomics and chromatin accessibility in multiple African population samplesPreprint

DeGorter, M. K., Goddard, P. C., Karakoç, E., Kundu, S., Yan, S. M., Nachun, D. C., Abell, N. S., Aguirre, M., Carstensen, T., Chen, Z., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.11.04.564839 · Cited by 13 · see citing works

Interspecies Organoids Reveal Human-Specific Molecular Features of Dopaminergic Neuron Development and VulnerabilityPreprint

Nolbrant, S., Wallace, J. L., Ding, J., Zhu, T., Sevetson, J. L., Kajtez, J., Baldacci, I. A., Corrigan, E. K., Hoglin, K., McMullen, R., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.11.14.623592 · Cited by 13 · see citing works

Characterization of the SARS-CoV-2 Host Response in Primary Human Airway Epithelial Cells from Aged Individuals

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Human iPSC and CRISPR targeted gene knock-in strategy for studying the somatic TIE2L914F mutation in endothelial cells

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Impact of genome build on RNA-seq interpretation and diagnostics

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A multi-regional human brain atlas of chromatin accessibility and gene expression facilitates promoter-isoform resolution genetic fine-mapping

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Streptococcus abundance and oral site tropism in humans and non-human primates reflects host and lifestyle differences

Velsko, I. M., & Warinner, C. (2025) · npj Biofilms and Microbiomes · doi:10.1038/s41522-024-00642-1 · Cited by 12 · see citing works

Fast, flexible analysis of differences in cellular composition with crumblr

Hoffman, G. E., & Roussos, P. (2026) · Nature Communications · doi:10.1038/s41467-026-75681-7 · Cited by 15 · see citing works

A large-scale genome-wide gene expression analysis in peripheral blood identifies very few differentially expressed genes related to antidepressant treatment and response in patients with major depressive disorder

Nøhr, A. K., Lindow, M., Forsingdal, A., Demharter, S., Nielsen, T. T., Buller, R., Moltke, I., Vitezic, M., & Albrechtsen, A. (2021) · Neuropsychopharmacology · doi:10.1038/s41386-021-01002-9 · Cited by 12 · see citing works

Efficient differential expression analysis of large-scale single-cell transcriptomics data using Dreamlet

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by Multiple Comparison test biocViews Statistics, MultipleComparisons, Microarray,DifferentialExpression, GeneExpression License GPL-2

Isella, C., Depends, R., & Yes, L. (2013)

doi:10.1093/bioinformatics/bti667BIOINFORMATICS ORIGINAL PAPER

Expression, G., Rocke, D. M., Goldberg, Z., Schweitert, C., & Santana, A. (2015)

biocViews Statistics, MultipleComparisons, Microarray,DifferentialExpression, GeneExpression License GPL-2

Isella, C., Isella, M. C., Depends, R., & Yes, L. (2013)

Cormotif: An R Package for Jointly Detecting Differential Gene Expression in Multiple Studies

Wei, Y., Tenzen, T., & Ji, H. (2016) · CRC Press eBooks · doi:10.1201/b20026-4