The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Automatic annotation of organellar genomes with DOGMA
Open accessAbstract
Summary: The Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of organellar (plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. DOGMA provides a graphical user interface for viewing and editing annotations. Annotations are stored on our password-protected server to enable repeated sessions of working on the same genome. Finished annotations can be extracted for direct submission to GenBank. Availability: http://phylocluster.biosci.utexas.edu/dogma/ Supplementary information: Detailed documentation and tutorials for annotating both animal mitochondrial and plant chloroplast genomes can be found on the DOGMA home page.
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Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Martin, W., Rujan, T., Richly, E., Hansen, A., Cornelsen, S., Lins, T., Leister, D., Stoebe, B., Hasegawa, M., & Penny, D. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.182432999 · Cited by 1,178 · cited 1×
“The comparison of complete organellar genome sequences is becoming increasingly important for reconstructing the evolutionary relationships of organisms [2, 3, 7, 8], for studying population structure and history [11], including those of humans [6], for identifying forensic materials [10], and for understanding the in…”
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Cited by
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
Chan, P. P., Lin, B. Y., Mak, A. J., & Lowe, T. M. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab688 · Cited by 1,925
Bellot, S., & Renner, S. S. (2016) · Genome Biology and Evolution · doi:10.1093/gbe/evv251 · Cited by 143
Schelkunov, M. I., Shtratnikova, V. Y., Nuraliev, M. S., Selosse, M.-A., Penin, A. A., & Logacheva, M. D. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv019 · Cited by 142
Muñoz-Gómez, S. A., Mejía-Franco, F. G., Durnin, K., Colp, M., Grisdale, C. J., Archibald, J. M., & Slamovits, C. H. (2017) · Current Biology · doi:10.1016/j.cub.2017.04.054 · Cited by 114
Zhu, Y., Zhang, X., Yan, S., Feng, C., Wang, D., Yang, W., Daud, M. K., Xiang, J., & Mei, L. (2023) · Plasmid · doi:10.1016/j.plasmid.2023.102670 · Cited by 24
Metadata
- Authors
- Wyman, S. K., Jansen, R. K., & Boore, J. L.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-06-04
- Volume
- 20
- Issue
- 17
- Pages
- 3252-3255
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2147096538
- Cited by
- 2,988
- References
- 2
- FWCI
- 6.89
- Type
- journal article
- Language
- en
- Open access
- bronze
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