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SciRoKo: a new tool for whole genome microsatellite search and investigation
Open accessAbstract
Summary: SciRoKo is a user-friendly software tool for the identification of microsatellites in genomic sequences. The combination of an extremely fast search algorithm with a built-in summary statistic tool makes SciRoKo an excellent tool for full genome analysis. Compared to other already existing tools, SciRoKo also allows the analysis of compound microsatellites. Availability: free for use: www.kofler.or.at/Bioinformatics Contact: robert.kofler@boku.ac.at Supplementary information: Supplementary data are available at Bioinformatics online.
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Cites
Tandem repeats finder: a program to analyze DNA sequences
Benson, G. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.2.573 · Cited by 9,374
Cited by
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Beier, S., Thiel, T., Münch, T., Scholz, U., & Mascher, M. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx198 · Cited by 2,628
Microsatellite markers: what they mean and why they are so useful
Vieira, M. L. C., Santini, L., Diniz, A. L., & Munhoz, C. D. F. (2016) · Genetics and Molecular Biology · doi:10.1590/1678-4685-gmb-2016-0027 · Cited by 837
The Genome 10K Project: A Way Forward
Koepfli, K.-P., Paten, B., Scientists, T. G. 1. C. O., & O’Brien, S. J. (2015) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-090414-014900 · Cited by 311
The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding
Shirasawa, K., Isuzugawa, K., Ikenaga, M., Saito, Y., Yamamoto, T., Hirakawa, H., & Isobe, S. (2017) · DNA Research · doi:10.1093/dnares/dsx020 · Cited by 294
Hirakawa, H., Shirasawa, K., Miyatake, K., Nunome, T., Negoro, S., Ohyama, A., Yamaguchi, H., Sato, S., Isobe, S., Tabata, S., et al. (2014) · DNA Research · doi:10.1093/dnares/dsu027 · Cited by 285
Metadata
- Authors
- Kofler, R., Schlötterer, C., & Lelley, T.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2007-04-26
- Volume
- 23
- Issue
- 13
- Pages
- 1683-1685
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2150641734
- Cited by
- 340
- References
- 1
- FWCI
- 6.03
- Type
- journal article
- Language
- en
- Open access
- hybrid
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