The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
rtracklayer: an R package for interfacing with genome browsers
Open accessAbstract
Summary: The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser and (ii) create and manipulate browser views to focus on a particular set of annotations in a specific genomic region. Currently, the UCSC genome browser is supported. Availability: The package is freely available from http://www.bioconductor.org/. A quick-start vignette is included with the package. Contact: mflawren@fhcrc.org
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Cites
The Human Genome Browser at UCSC
Kent, W. J., Sugnet, C. W., Furey, T. S., Roskin, K. M., Pringle, T. H., Zahler, A. M., & Haussler, A. D. (2002) · Genome Research · doi:10.1101/gr.229102 · Cited by 10,400
Research works printed but not linked: 4
- Durbin, 2000, General Feature Format
- Durinck, 2009, GenomeGraphs: integrated genomic data visualization with R, BMC Bioinformatics, 10, 2, 10.1186/1471-2105-10-2 · DOI
- UCSC Genome Bioinformatics Group, 2008, Browser Extended Display Format
- UCSC Genome Bioinformatics Group, 2008, Wiggle Format
Cited by
Võsa, U., Claringbould, A., Westra, H.-J., Bonder, M. J., Deelen, P., Zeng, B., Kirsten, H., Saha, A., Kreuzhuber, R., Yazar, S., et al. (2021) · Nature Genetics · doi:10.1038/s41588-021-00913-z · Cited by 2,607
Local regulation of gene expression by lncRNA promoters, transcription and splicing
Engreitz, J. M., Haines, J. E., Perez, E. M., Munson, G., Chen, J., Kane, M., McDonel, P. E., Guttman, M., & Lander, E. S. (2016) · Nature · doi:10.1038/nature20149 · Cited by 1,253
Stromal gene expression defines poor-prognosis subtypes in colorectal cancer
Calon, A., Lonardo, E., Berenguer-Llergo, A., Espinet, E., Hernando-Momblona, X., Iglesias, M., Sevillano, M., Palomo-Ponce, S., Tauriello, D. V. F., Byrom, D., et al. (2015) · Nature Genetics · doi:10.1038/ng.3225 · Cited by 1,070
Buck, A. H., Coakley, G., Simbari, F., McSorley, H. J., Quintana, J. F., Le Bihan, T., Kumar, S., Abreu-Goodger, C., Lear, M., Harcus, Y., et al. (2014) · Nature Communications · doi:10.1038/ncomms6488 · Cited by 770
Systematic mapping of functional enhancer–promoter connections with CRISPR interference
Fulco, C. P., Munschauer, M., Anyoha, R., Munson, G., Grossman, S. R., Perez, E. M., Kane, M., Cleary, B., Lander, E. S., & Engreitz, J. M. (2016) · Science · doi:10.1126/science.aag2445 · Cited by 643
Metadata
- Authors
- Lawrence, M., Gentleman, R., & Carey, V.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-05-25
- Volume
- 25
- Issue
- 14
- Pages
- 1841-1842
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2099143842
- Cited by
- 960
- References
- 1
- FWCI
- 0.96
- Type
- journal article
- Language
- en
- Open access
- hybrid
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