The DOI matches its Crossref record; 12 of the 12 references it cites were found in a registry or an index.
Reordering contigs of draft genomes using the Mauve Aligner
Open accessAbstract
Summary: Mauve Contig Mover provides a new method for proposing the relative order of contigs that make up a draft genome based on comparison to a complete or draft reference genome. A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results. Availability: The software is available for download at http://gel.ahabs.wisc.edu/mauve. Contact: rissman@wisc.edu Supplementary information: Supplementary data are available at Bioinformatics online and http://gel.ahabs.wisc.edu
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Cites
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Edgar, R. C. (2004) · BMC Bioinformatics · doi:10.1186/1471-2105-5-113 · Cited by 8,970
The Complete Genome Sequence of Escherichia coli K-12
Blattner, F. R., Plunkett, G., Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., et al. (1997) · Science · doi:10.1126/science.277.5331.1453 · Cited by 7,452
Self-citationMauve: Multiple alignment of conserved genomic sequence with rearrangements
Darling, A. C. E., Mau, B., Blattner, F. R., & Perna, N. T. (2004) · Genome Research · doi:10.1101/gr.2289704 · Cited by 4,949
Self-citationGenome sequence of enterohaemorrhagic Escherichia coli O157:H7
Perna, N. T., Plunkett, G., Burland, V., Mau, B., Glasner, J. D., Rose, D. J., Mayhew, G. F., Evans, P. S., Gregor, J., Kirkpatrick, H. A., et al. (2001) · Nature · doi:10.1038/35054089 · Cited by 2,055
Self-citationHayashi, T. (2001) · DNA Research · doi:10.1093/dnares/8.1.11 · Cited by 1,273
Genome sequence of Yersinia pestis, the causative agent of plague
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Genome Sequence of Yersinia pestis KIM
Deng, W., Burland, V., Plunkett, G., Boutin, A., Mayhew, G. F., Liss, P., Perna, N. T., Rose, D. J., Mau, B., Zhou, S., et al. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.16.4601-4611.2002 · Cited by 540
Self-citationBell, K. S., Sebaihia, M., Pritchard, L., Holden, M. T. G., Hyman, L. J., Holeva, M. C., Thomson, N. R., Bentley, S. D., Churcher, L. J. C., Mungall, K., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0402424101 · Cited by 409
OSLay: optimal syntenic layout of unfinished assemblies
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Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
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Cited by
Snitkin, E. S., Zelazny, A. M., Thomas, P. J., Stock, F., Program, N. C. S., Henderson, D. K., Palmore, T. N., & Segre, J. A. (2012) · Science Translational Medicine · doi:10.1126/scitranslmed.3004129 · Cited by 863
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
Maury, M. M., Tsai, Y.-H., Charlier, C., Touchon, M., Chenal-Francisque, V., Leclercq, A., Criscuolo, A., Gaultier, C., Roussel, S., Brisabois, A., et al. (2016) · Nature Genetics · doi:10.1038/ng.3501 · Cited by 706
Jeselsohn, R., Yelensky, R., Buchwalter, G., Frampton, G., Meric-Bernstam, F., Gonzalez-Angulo, A. M., Ferrer-Lozano, J., Perez-Fidalgo, J. A., Cristofanilli, M., Gómez, H., et al. (2014) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-13-2332 · Cited by 674
Measurement of bacterial replication rates in microbial communities
Brown, C. T., Olm, M. R., Thomas, B. C., & Banfield, J. F. (2016) · Nature Biotechnology · doi:10.1038/nbt.3704 · Cited by 408
ALLMAPS: robust scaffold ordering based on multiple maps
Tang, H., Zhang, X., Miao, C., Zhang, J., Ming, R., Schnable, J. C., Schnable, P. S., Lyons, E., & Lu, J. (2015) · Genome Biology · doi:10.1186/s13059-014-0573-1 · Cited by 388
Metadata
- Authors
- Rissman, A. I., Mau, B., Biehl, B. S., Darling, A. E., Glasner, J. D., & Perna, N. T.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-06-10
- Volume
- 25
- Issue
- 16
- Pages
- 2071-2073
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2096375646
- Cited by
- 579
- References
- 12
- FWCI
- 4.32
- Type
- journal article
- Language
- en
- Open access
- hybrid
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