The DOI matches its Crossref record; 18 of the 18 references it cites were found in a registry or an index.
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level
Open accessAbstract
Summary: The first open source software suite for experimentalists and curators that (i) assists in the annotation and local management of experimental metadata from high-throughput studies employing one or a combination of omics and other technologies; (ii) empowers users to uptake community-defined checklists and ontologies; and (iii) facilitates submission to international public repositories. Availability and Implementation: Software, documentation, case studies and implementations at http://www.isa-tools.org Contact: isatools@googlegroups.com
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Citations
Cites
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
The OBI Consortium, Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., Goldberg, L. J., Eilbeck, K., Ireland, A., et al. (2007) · Nature Biotechnology · doi:10.1038/nbt1346 · Cited by 2,560
Self-citationNCBI GEO: archive for high-throughput functional genomic data
Barrett, T., Troup, D. B., Wilhite, S. E., Ledoux, P., Rudnev, D., Evangelista, C., Kim, I. F., Soboleva, A., Tomashevsky, M., Marshall, K. A., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn764 · Cited by 1,041
BioPortal: ontologies and integrated data resources at the click of a mouse
Noy, N. F., Shah, N. H., Whetzel, P. L., Dai, B., Dorf, M., Griffith, N., Jonquet, C., Rubin, D. L., Storey, M.-A., Chute, C. G., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp440 · Cited by 875
Howe, D., Costanzo, M., Fey, P., Gojobori, T., Hannick, L., Hide, W., Hill, D. P., Kania, R., Schaeffer, M., St Pierre, S., et al. (2008) · Nature · doi:10.1038/455047a · Cited by 693
Self-citationTaylor, C. F., Field, D., Sansone, S.-A., Aerts, J., Apweiler, R., Ashburner, M., Ball, C. A., Binz, P.-A., Bogue, M., Booth, T., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt.1411 · Cited by 558
Self-citationParkinson, H., Kapushesky, M., Kolesnikov, N., Rustici, G., Shojatalab, M., Abeygunawardena, N., Berube, H., Dylag, M., Emam, I., Farne, A., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn889 · Cited by 422
Self-citationThe Proteomics Identifications database: 2010 update
Vizcaíno, J. A., Côté, R., Reisinger, F., Barsnes, H., Foster, J. M., Rameseder, J., Hermjakob, H., & Martens, L. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp964 · Cited by 286
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
Côté, R. G., Jones, P., Apweiler, R., & Hermjakob, H. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-97 · Cited by 222
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
Rayner, T. F., Rocca-Serra, P., Spellman, P. T., Causton, H. C., Farne, A., Holloway, E., Irizarry, R. A., Liu, J., Maier, D. S., Miller, M., et al. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-489 · Cited by 217
Self-citationPost-publication sharing of data and tools
participants, C. R. M., Schofield, P. N., Bubela, T., Weaver, T., Portilla, L., Brown, S. D., Hancock, J. M., Einhorn, D., Tocchini-Valentini, G., Hrabe de Angelis, M., et al. (2009) · Nature · doi:10.1038/461171a · Cited by 167
Cited by
Whetzel, P. L., Noy, N. F., Shah, N. H., Alexander, P. R., Nyulas, C., Tudorache, T., & Musen, M. A. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr469 · Cited by 783
The role of reporting standards for metabolite annotation and identification in metabolomic studies
Salek, R. M., Steinbeck, C., Viant, M. R., Goodacre, R., & Dunn, W. B. (2013) · GigaScience · doi:10.1186/2047-217x-2-13 · Cited by 507
Toward interoperable bioscience data
Sansone, S.-A., Rocca-Serra, P., Field, D., Maguire, E., Taylor, C., Hofmann, O., Fang, H., Neumann, S., Tong, W., Amaral-Zettler, L., et al. (2012) · Nature Genetics · doi:10.1038/ng.1054 · Cited by 475
Self-citationKeenan, A. B., Jenkins, S. L., Jagodnik, K. M., Koplev, S., He, E., Torre, D., Wang, Z., Dohlman, A. B., Silverstein, M. C., Lachmann, A., et al. (2018) · Cell Systems · doi:10.1016/j.cels.2017.11.001 · Cited by 423
The Ontology for Biomedical Investigations
Bandrowski, A., Brinkman, R., Brochhausen, M., Brush, M. H., Bug, B., Chibucos, M. C., Clancy, K., Courtot, M., Derom, D., Dumontier, M., et al. (2016) · PLOS ONE · doi:10.1371/journal.pone.0154556 · Cited by 386
Self-citation
Metadata
- Authors
- Rocca-Serra, P., Brandizi, M., Maguire, E., Sklyar, N., Taylor, C., Begley, K., Field, D., Harris, S., Hide, W., Hofmann, O., Neumann, S., Sterk, P., Tong, W., & Sansone, S.-A.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-08-02
- Volume
- 26
- Issue
- 18
- Pages
- 2354-2356
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2130430745
- Cited by
- 285
- References
- 18
- FWCI
- 70.48
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- CoChat. (2026). Citation check: ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. https://app.cochat.ai/papers/10.1093/bioinformatics/btq415
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- Rocca-Serra, P., Brandizi, M., Maguire, E., Sklyar, N., Taylor, C., Begley, K., Field, D., Harris, S., Hide, W., Hofmann, O., Neumann, S., Sterk, P., Tong, W., & Sansone, S.-A. (2010). ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics. https://doi.org/10.1093/bioinformatics/btq415
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
