The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications
Open accessAbstract
The National Center for Biomedical Ontology (NCBO) is one of the National Centers for Biomedical Computing funded under the NIH Roadmap Initiative. Contributing to the national computing infrastructure, NCBO has developed BioPortal, a web portal that provides access to a library of biomedical ontologies and terminologies (http://bioportal.bioontology.org) via the NCBO Web services. BioPortal enables community participation in the evaluation and evolution of ontology content by providing features to add mappings between terms, to add comments linked to specific ontology terms and to provide ontology reviews. The NCBO Web services (http://www.bioontology.org/wiki/index.php/NCBO_REST_services) enable this functionality and provide a uniform mechanism to access ontologies from a variety of knowledge representation formats, such as Web Ontology Language (OWL) and Open Biological and Biomedical Ontologies (OBO) format. The Web services provide multi-layered access to the ontology content, from getting all terms in an ontology to retrieving metadata about a term. Users can easily incorporate the NCBO Web services into software applications to generate semantically aware applications and to facilitate structured data collection.
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Citations
Cites
BioPortal: ontologies and integrated data resources at the click of a mouse
Noy, N. F., Shah, N. H., Whetzel, P. L., Dai, B., Dorf, M., Griffith, N., Jonquet, C., Rubin, D. L., Storey, M.-A., Chute, C. G., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp440 · Cited by 875
Self-citationHowe, D., Costanzo, M., Fey, P., Gojobori, T., Hannick, L., Hide, W., Hill, D. P., Kania, R., Schaeffer, M., St Pierre, S., et al. (2008) · Nature · doi:10.1038/455047a · Cited by 693
RadLex: A New Method for Indexing Online Educational Materials
Langlotz, C. P. (2006) · RadioGraphics · doi:10.1148/rg.266065168 · Cited by 427
Rocca-Serra, P., Brandizi, M., Maguire, E., Sklyar, N., Taylor, C., Begley, K., Field, D., Harris, S., Hide, W., Hofmann, O., et al. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq415 · Cited by 285
The open biomedical annotator.
Jonquet, C., Shah, N. H., & Musen, M. A. (2009) · PubMed Central · Cited by 257
Self-citationREDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
Gallo, S. M., Gerrard, D. T., Miner, D., Simich, M., Des Soye, B., Bergman, C. M., & Halfon, M. S. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq999 · Cited by 179
Ontology-driven indexing of public datasets for translational bioinformatics
Shah, N. H., Jonquet, C., Chiang, A. P.-F., Butte, A. J., Chen, R., & Musen, M. A. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-s2-s1 · Cited by 120
Self-citationBuilding a biomedical ontology recommender web service
Jonquet, C., Musen, M. A., & Shah, N. H. (2010) · Journal of Biomedical Semantics · doi:10.1186/2041-1480-1-s1-s1 · Cited by 74
Self-citationKundu, S., Itkin, M. G., Gervais, D. A., Krishnamurthy, V. N., Wallace, M. J., Cardella, J. F., Rubin, D. L., & Langlotz, C. P. (2008) · Journal of Vascular and Interventional Radiology · doi:10.1016/j.jvir.2008.10.022 · Cited by 32
Cited by
The REDCap consortium: building an international community of software platform partners
Harris, P. A., Taylor, R., Minor, B. L., Elliott, V., Fernandez, M., O'Neal, L., McLeod, L., Delacqua, G., Delacqua, F., Kirby, J., et al. (2019) · Journal of Biomedical Informatics · doi:10.1016/j.jbi.2019.103208 · Cited by 24,013
“The growth of the REDCap Consortium and user base has created opportunities to collaborate with other consortia (e.g., PhenX [52,53], Medical Data Models [54], BioPortal [55], PROMIS [56]) to integrate standardized terminologies and instruments.”
BackgroundThe NHGRI GWAS Catalog, a curated resource of SNP-trait associations
Welter, D., MacArthur, J., Morales, J., Burdett, T., Hall, P., Junkins, H., Klemm, A., Flicek, P., Manolio, T., Hindorff, L., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1229 · Cited by 2,707
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research
Slenter, D. N., Kutmon, M., Hanspers, K., Riutta, A., Windsor, J., Nunes, N., Mélius, J., Cirillo, E., Coort, S. L., Digles, D., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1064 · Cited by 908
Gateways to the FANTOM5 promoter level mammalian expression atlas
Lizio, M., Harshbarger, J., Shimoji, H., Severin, J., Kasukawa, T., Sahin, S., Abugessaisa, I., Fukuda, S., Hori, F., Ishikawa-Kato, S., et al. (2015) · Genome Biology · doi:10.1186/s13059-014-0560-6 · Cited by 871
Systematic review automation technologies
Tsafnat, G., Glasziou, P., Choong, M. K., Dunn, A., Galgani, F., & Coiera, E. (2014) · Systematic Reviews · doi:10.1186/2046-4053-3-74 · Cited by 472
“BioPortal [73] is an ontology that maps vocabularies and includes MeSH but still lacks mappings to EMTREE or other literary database vocabularies.”
Background
Metadata
- Authors
- Whetzel, P. L., Noy, N. F., Shah, N. H., Alexander, P. R., Nyulas, C., Tudorache, T., & Musen, M. A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-06-14
- Volume
- 39
- Issue
- suppl
- Pages
- W541-W545
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2123152121
- Cited by
- 783
- References
- 9
- FWCI
- 16.93
- Type
- journal article
- Language
- en
- Open access
- gold
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- Whetzel, P. L., Noy, N. F., Shah, N. H., Alexander, P. R., Nyulas, C., Tudorache, T., & Musen, M. A. (2011). BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Research. https://doi.org/10.1093/nar/gkr469
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
