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AMPA: an automated web server for prediction of protein antimicrobial regions
Open accessAbstract
Summary: AMPA is a web application for assessing the antimicrobial domains of proteins, with a focus on the design on new antimicrobial drugs. The application provides fast discovery of antimicrobial patterns in proteins that can be used to develop new peptide-based drugs against pathogens. Results are shown in a user-friendly graphical interface and can be downloaded as raw data for later examination. Availability: AMPA is freely available on the web at http://tcoffee.crg.cat/apps/ampa. The source code is also available in the web. Contact: marc.torrent@upf.edu; david.andreu@upf.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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Cited by
Meher, P. K., Sahu, T. K., Saini, V., & Rao, A. R. (2017) · Scientific Reports · doi:10.1038/srep42362 · Cited by 516
IRGB10 Liberates Bacterial Ligands for Sensing by the AIM2 and Caspase-11-NLRP3 Inflammasomes
Man, S. M., Karki, R., Sasai, M., Place, D. E., Kesavardhana, S., Temirov, J., Frase, S., Zhu, Q., Malireddi, R. K. S., Kuriakose, T., et al. (2016) · Cell · doi:10.1016/j.cell.2016.09.012 · Cited by 312
The Road from Host-Defense Peptides to a New Generation of Antimicrobial Drugs
Boto, A., Pérez de la Lastra, J., & González, C. (2018) · Molecules · doi:10.3390/molecules23020311 · Cited by 136
The rumen microbiome: an underexplored resource for novel antimicrobial discovery
Oyama, L. B., Girdwood, S. E., Cookson, A. R., Fernandez-Fuentes, N., Privé, F., Vallin, H. E., Wilkinson, T. J., Golyshin, P. N., Golyshina, O. V., Mikut, R., et al. (2017) · npj Biofilms and Microbiomes · doi:10.1038/s41522-017-0042-1 · Cited by 80
Metadata
- Authors
- Torrent, M., Di Tommaso, P., Pulido, D., Nogués, M. V., Notredame, C., Boix, E., & Andreu, D.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-11-03
- Volume
- 28
- Issue
- 1
- Pages
- 130-131
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2114247676
- Cited by
- 171
- References
- 0
- FWCI
- 5.75
- Type
- journal article
- Language
- en
- Open access
- bronze
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- CoChat. (2026). Citation check: AMPA: an automated web server for prediction of protein antimicrobial regions. https://app.cochat.ai/papers/10.1093/bioinformatics/btr604
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- Torrent, M., Di Tommaso, P., Pulido, D., Nogués, M. V., Notredame, C., Boix, E., & Andreu, D. (2012). AMPA: an automated web server for prediction of protein antimicrobial regions. Bioinformatics. https://doi.org/10.1093/bioinformatics/btr604
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
