The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
Open accessAbstract
Summary: The analysis of genetic data often requires a combination of several approaches using different and sometimes incompatible programs. In order to facilitate data exchange and file conversions between population genetics programs, we introduce PGDSpider, a Java program that can read 27 different file formats and export data into 29, partially overlapping, other file formats. The PGDSpider package includes both an intuitive graphical user interface and a command-line version allowing its integration in complex data analysis pipelines. Availability: PGDSpider is freely available under the BSD 3-Clause license on http://cmpg.unibe.ch/software/PGDSpider/ Contact: heidi.lischer@iee.unibe.ch Supplementary information: Supplementary data are available at Bioinformatics online.
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Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
A map of human genome variation from population-scale sequencing.
The 1000 Genomes Project Consortium (2010) · Nature · doi:10.1038/nature09534 · Cited by 7,877
Sequencing technologies – the next generation
Metzker, M. L. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2626 · Cited by 7,066
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Population genomics of the critically endangered kākāpō
Dussex, N., van der Valk, T., Morales, H. E., Wheat, C. W., Díez-del-Molino, D., von Seth, J., Foster, Y., Kutschera, V. E., Guschanski, K., Rhie, A., et al. (2021) · Cell Genomics · doi:10.1016/j.xgen.2021.100002 · Cited by 226
The evolutionary history of dogs in the Americas
Ní Leathlobhair, M., Perri, A. R., Irving-Pease, E. K., Witt, K. E., Linderholm, A., Haile, J., Lebrasseur, O., Ameen, C., Blick, J., Boyko, A. R., et al. (2018) · Science · doi:10.1126/science.aao4776 · Cited by 184
Detection of selection signatures for agonistic behaviour in cattle
Eusebi, P. G., Cortés, O., Carleos, C., Dunner, S., & Cañon, J. (2018) · Journal of Animal Breeding and Genetics · doi:10.1111/jbg.12325 · Cited by 25
Wilk, A. J., Donlon, K. C., & Peterman, W. E. (2020) · Urban Ecosystems · doi:10.1007/s11252-020-00958-8 · Cited by 14
Metadata
- Authors
- Lischer, H. E. L., & Excoffier, L.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-11-21
- Volume
- 28
- Issue
- 2
- Pages
- 298-299
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2144573758
- Cited by
- 1,316
- References
- 3
- FWCI
- 4.93
- Type
- journal article
- Language
- en
- Open access
- bronze
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