rehh : an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

Gautier, Mathieu, Vitalis, Renaud·2012·Bioinformatics

Cited by (554)

Items 201–300 of 554

  1. Large Genetic Diversity and Strong Positive Selection in F-Box and GPCR Genes among the Wild Isolates of Caenorhabditis elegans
    Fuqiang Ma, Chun Yin Lau, Chaogu Zheng · 2021 · Genome Biology and Evolution
  2. Hitchhiking Mapping of Candidate Regions Associated with Fat Deposition in Iranian Thin and Fat Tail Sheep Breeds Suggests New Insights into Molecular Aspects of Fat Tail Selection
    Mohammad Hossein Moradi, A. Nejati‐Javaremi, Mohammad Moradi-Shahrbabak, K. G. Dodds, Rüdiger Bräuning, John Colin McEwan · 2022 · Animals
  3. Analysis on the desert adaptability of indigenous sheep in the southern edge of Taklimakan Desert
    Cheng-long Zhang, Chunjie Liu, Jihu Zhang, Langman Zheng, Qianqian Chang, Zilong Cui, Shudong Liu · 2022 · Scientific Reports
  4. Population genetics-informed meta-analysis in seven genes associated with risk to dengue fever disease
    Marisa Oliveira, Diana P. Saraiva, Bruno Cavadas, Verónica Fernandes, Nicole Pedro, Isabelle Casadémont, Fanny Koeth, Farida Alshamali, Nourdin Harich, Lotfi Cherni et al. · 2018 · Infection Genetics and Evolution
  5. LCORL and STC2 Variants Increase Body Size and Growth Rate in Cattle and Other Animals
    Fengting Bai, Yudong Cai, Min Qi, Chen Liang, Linqian Pan, Yayi Liu, Yulong Feng, Xu Cao, Qimeng Yang, Gang Ren et al. · 2025 · Genomics Proteomics & Bioinformatics
  6. Characterizing the genomic variation and population dynamics of Plasmodium falciparum malaria parasites in and around Lake Victoria, Kenya
    Ashley A. Osborne, Emilia Mańko, Mika Takeda, Akira Kaneko, Wataru Kagaya, Chim W. Chan, Mtakai Ngara, James Kongere, Kiyoshi Kita, Susana G. Campino et al. · 2021 · Scientific Reports
  7. Indigenous people from Amazon show genetic signatures of pathogen-driven selection
    Cainã M. Couto-Silva, Kelly Nunes, Gabriela Venturini, Marcos Araújo Castro e Silva, Lygia V. Pereira, David Comas, Alexandre C. Pereira, Tábita Hünemeier · 2023 · Science Advances
  8. Genetic Diversity in Invasive Populations of Argentine Stem Weevil Associated with Adaptation to Biocontrol
    Thomas W.R. Harrop, Marissa F. Le Lec, Ruy Jáuregui, Shannon E. Taylor, Sarah N. Inwood, Tracey C. van Stijn, Hannah Henry, John Skelly, Siva Ganesh, Rachael Ashby et al. · 2020 · Insects
  9. Genome-wide scans for signatures of selection in Mangalarga Marchador horses using high-throughput SNP genotyping
    Wellington Bizarria dos Santos, Gustavo Pimenta Schettini, Amanda Marchi Maiorano, Fernando de Oliveira Bussiman, Júlio César de Carvalho Balieiro, Guilherme de Camargo Ferraz, Guilherme Luís Pereira, Welder Angelo Baldassini, Otávio Rodrigues Machado Neto, Henrique Nunes de Oliveira et al. · 2021 · BMC Genomics
  10. Biologically Enhanced Genome-Wide Association Study Provides Further Evidence for Candidate Loci and Discovers Novel Loci That Influence Risk of Anterior Cruciate Ligament Rupture in a Dog Model
    Lauren A. Baker, Mehdi M. Momen, Rachel M. McNally, Mark E. Berres, Emily E. Binversie, Susannah J. Sample, Peter Muir · 2021 · Frontiers in Genetics
  11. Multiple epistatic DNA variants in a single gene affect gene expression in trans
    Sheila Lutz, Krisna Van Dyke, Matthew A Feraru, Frank Wolfgang Albert · 2021 · Genetics
  12. Unraveling Admixture, Inbreeding, and Recent Selection Signatures in West African Indigenous Cattle Populations in Benin
    Sèyi Fridaïus Ulrich Vanvanhossou, Tong Yin, Carsten Scheper, Ruedi Fries, Luc Hippolyte Dossa, Sven König · 2021 · Frontiers in Genetics
  13. An NBS‐LRR protein in the Rpp1 locus negates the dominance of Rpp1‐mediated resistance against Phakopsora pachyrhizi in soybean
    Wei Wei, Xing Wu, Alexandre Garcia, Nancy K. McCoppin, João Paulo Gomes Viana, Praerona S. Murad, David R. Walker, Glen Lee Hartman, Leslie L. Domier, Matthew E. Hudson et al. · 2022 · The Plant Journal
  14. Ancient hybridization leads to the repeated evolution of red flowers across a monkeyflower radiation
    Aidan W. Short, Matthew A. Streisfeld · 2023 · Evolution Letters
  15. Deciphering climate resilience in Indian cattle breeds by selection signature analyses
    Sonali Sonejita Nayak, Manjit Panigrahi, Divya Rajawat, Kanika Ghildiyal, Anurodh Sharma, Karan Jain, Bharat Bhushan, Triveni Dutt · 2024 · Tropical Animal Health and Production
  16. Detection of Selection Signatures on the X Chromosome in Three Sheep Breeds
    Caiye Zhu, Hongying Fan, Zehu Yuan, Shijin Hu, Li Zhang, Caihong Wei, Qin Zhang, Fuping Zhao, Lixin Du · 2015 · International Journal of Molecular Sciences
  17. Human adaptation to arsenic in Bolivians living in the Andes
    Jessica De Loma, Mário Vicente, Noemí Tirado, Franz Ascui, Marie Vahter, Jacques Gardon, Carina M. Schlebusch, Karin Bröberg · 2022 · Chemosphere
  18. A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen
    Ursula Oggenfuss, Thomas Badet, Thomas Wicker, Fanny E. Hartmann, Nikhil Kumar Singh, Leen Abraham, Petteri Karisto, Tiziana Vonlanthen, Christopher C. Mundt, Bruce Alan McDonald et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  19. Genomewide Mapping of Selection Signatures and Genes for Extreme Feather Pecking in Two Divergently Selected Laying Hen Lines
    Hanna Iffland, Robin Wellmann, Markus Schmid, Siegfried Preuß, Jens Tetens, W. Bessei, Jörn Bennewitz · 2020 · Animals
  20. Analysis of genetic diversity and population structure among cultivated potato clones from Korea and global breeding programs
    Kwang Ryong Jo, Seungho Cho, Ji‐Hong Cho, Hyun-Jin Park, Jang‐Gyu Choi, Young-Eun Park, Kwang‐Soo Cho · 2022 · Scientific Reports
  21. Comparative genomic analyses provide new insights into evolutionary history and conservation genomics of gorillas
    Tom van der Valk, Axel Jensen, Damien Caillaud, Katerina Guschanski · 2024 · BMC Ecology and Evolution
  22. A molecular mechanism for bright color variation in parrots
    Roberto Arbore, Soraia Barbosa, Jindřich Brejcha, Yohey Ogawa, Yu Liu, Michaël P. J. Nicolaï, Paulo Pereira, Stephen J. Sabatino, Alison Cloutier, Emily Shui Kei Poon et al. · 2024 · Science
  23. The Effects of Microsatellite Selection on Linked Sequence Diversity
    Ryan J. Haasl, Ross Johnson, Bret A. Payseur · 2014 · Genome Biology and Evolution
  24. Variation and Evolution in the Glutamine-Rich Repeat Region of Drosophila Argonaute-2
    William Hunt Palmer, Darren J. Obbard · 2016 · G3 Genes Genomes Genetics
  25. Population Genomic Structure and Recent Evolution of Plasmodium knowlesi , Peninsular Malaysia
    Suzanne E. Hocking, Paul C. S. Divis, Khamisah Abdul Kadir, Balbir Bagicha Singh, David J. Conway · 2020 · Emerging infectious diseases
  26. Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding
    Chen Cao, Jingni He, Lauren E. Mak, Deshan Perera, Devin Kwok, Jia Shung Wang, Minghao Li, Tobias Mourier, Stefan Gavriliuc, Matthew Greenberg et al. · 2021 · Molecular Biology and Evolution
  27. The genetics and evolution of eye color in domestic pigeons (Columba livia)
    Si Si, Xiao Jing Xu, Yan Zhuang, Xiaodong Gao, Honghai Zhang, Zhengting Zou, Shu‐Jin Luo · 2021 · PLoS Genetics
  28. Effect of EGLN1 Genetic Polymorphisms on Hemoglobin Concentration in Andean Highlanders
    Yoshiki Yasukochi, Takayuki Nishimura, Juan Ugarte, Mayumi Ohnishi, Mika Nishihara, Guillermo Alvarez, Hideki Fukuda, Victor Mendoza, Kiyoshi Aoyagi · 2020 · BioMed Research International
  29. Genome-wide scans for selection signatures in indigenous pigs revealed candidate genes relating to heat tolerance
    Ziqi Zhong, Rui Li, Zonghua Wang, S.S. Tian, Xiaofeng Xie, Zucheng Wang, W. Na, Qingsong Wang, Yuchun Pan, Qian Xiao · 2023 · animal
  30. Genome-wide discovery of selection signatures in four Anatolian sheep breeds revealed by ddRADseq
    Bahar Argun Karslı, Eymen Demir, Ümit Bilginer, Huriye Doğru, Taki Karslı, Sarp Kaya · 2024 · Scientific Reports
  31. Locus‐specific ancestry to detect recent response to selection in admixed Swiss Fleckvieh cattle
    Negar Khayatzadeh, Gábor Mészáros, Yuri Tani Utsunomiya, José Fernando Garcia, U. Schnyder, Birgit Gredler, Ino Čurik, Johann Sölkner · 2016 · Animal Genetics
  32. Detecting the footprint of selection on the genomes of Murciano‐Granadina goats
    Dailu Guan, Amparo M. Martínez, María Gracia Luigi‐Sierra, J. V. Delgado, Vincenzo Landi, Anna Castelló, Javier Fernández Álvarez, X. Such, J. Jordana, Marcel Amills · 2021 · Animal Genetics
  33. Combined approaches to identify genomic regions involved in phenotypic differentiation between low divergent breeds: Application in Sardinian sheep populations
    Salvatore Mastrangelo, Slim Ben Jemaa, Gianluca Sottile, Sara Casu, Baldassare Portolano, Elena Ciani, Fabio Pilla · 2019 · Journal of Animal Breeding and Genetics
  34. Genetic diversity and adaptability of native sheep breeds from different climatic zones
    George Wanjala, Zoltán Bagi, Dinu Găvojdian, Bouabid Badaoui, Putri Kusuma Astuti, Alexandru Eugeniu Mizeranschi, Elena Ilişiu, Husein Ohran, Eva Pašić-Juhas, Dimitrios Loukovitis et al. · 2025 · Scientific Reports
  35. Selection signature analysis and genome-wide divergence of South African Merino breeds from their founders
    Edgar Farai Dzomba, Magriet A. van der Nest, J. N. T. Mthembu, Pranisha Soma, M.A. Snyman, M. Chimonyo, Farai Catherine Muchadeyi · 2023 · Frontiers in Genetics
  36. Genetic diversity and signatures of selection in four indigenous horse breeds of Iran
    Seyedeh Fatemeh Mousavi, Mohammad Razmkabir, Jalal Rostamzadeh, Hamidreza Seyedabadi, Rakan Naboulsi, Jessica L. Petersen, Gabriella Lindgren · 2023 · Heredity
  37. Genome‐wide screening for selection signatures in native and cosmopolitan cattle breeds reared in Türkiye
    Eymen Demir, Nina Moravčí­ková, Sarp Kaya, Radovan Kasarda, Ümit Bilginer, Huriye Doğru, Murat Soner Balcıoğlu, Taki Karslı · 2023 · Animal Genetics
  38. Domestication of the Amazonian fruit tree cupuaçu may have stretched over the past 8000 years
    Matheus Colli‐Silva, James Edward Richardson, Eduardo Góes Neves, Jennifer G. Watling, Antônio Figueira, José Rubens Pirani · 2023 · Communications Earth & Environment
  39. Genomics reveals heterogeneous Plasmodium falciparum transmission and selection signals in Zambia
    Abebe Alemu Fola, Qixin He, Shaojun Xie, Jyothi Thimmapuram, Ketaki P. Bhide, Jack Dorman, Ilinca I. Ciubotariu, Mulenga Mwenda, Brenda Mambwe, Conceptor Mulube et al. · 2024 · Communications Medicine
  40. Genome-wide comparison of allele-specific gene expression between African and European populations
    L. Tian, Asifullah Khan, Zhi-Lin Ning, Kai Yuan, Chao Zhang, Haiyi Lou, Yuan Yuan, Shu-Hua Xu · 2018 · Human Molecular Genetics
  41. Indigenous Ancestry and Admixture in the Uruguayan Population
    Lucía Spangenberg, María Inés Fariello, Darío Arce, Gabriel Illanes, Gonzalo Greif, Jong-Yeon Shin, Seong‐Keun Yoo, Jeong‐Sun Seo, Carlos Robello, Changhoon Kim et al. · 2021 · Frontiers in Genetics
  42. Characterization of the biological processes shaping the genetic structure of the Italian population
    Silvia Parolo, Antonella Lisa, Davide Gentilini, Anna Maria Di Blasio, Simona Barlera, Enrico Nicolis, Giorgio Battista Boncoraglio, Eugenio Agostino Parati, Silvia Bione · 2015 · BMC Genetics
  43. Genome-wide SNP analysis of Plasmodium falciparum shows differentiation at drug-resistance-associated loci among malaria transmission settings in southern Mali
    Aoua Coulibaly, Mouhamadou Fadel Diop, Aminatou Koné, Antoine Dara, Amed Ouattara, Nicola Mulder, Olivo Miotto, Mahamadou Diakité, ABDOULAYE A. DJIMDÉ, Alfred Amambua‐Ngwa · 2022 · Frontiers in Genetics
  44. The evolution of transposable elements in Brachypodium distachyon is governed by purifying selection, while neutral and adaptive processes play a minor role
    Robert Horvath, Nikolaos Minadakis, Yann Bourgeois, Anne C. Roulin · 2023 · eLife
  45. Genome-wide detection of positive and balancing signatures of selection shared by four domesticated rainbow trout populations (Oncorhynchus mykiss)
    Katy Paul, Gwendal Restoux, Florence Phocas · 2024 · Genetics Selection Evolution
  46. Genomic insights into adaptation and inbreeding among Sub-Saharan African cattle from pastoral and agropastoral systems
    Oludayo Michael Akinsola, Abdulraheem Arome Musa, Lal Muansangi, Sanchit P. Singh, Sabyasachi Mukherjee, Anupama Mukherjee · 2024 · Frontiers in Genetics
  47. Population Genomic Analysis of 962 Whole Genome Sequences of Humans Reveals Natural Selection in Non-Coding Regions
    Fuli Yu, Jian Lü, Xiaoming Liu, Élodie Gazave, Diana Chang, Srilakshmi M. Raj, Haley Hunter-Zinck, Ran Blekhman, Leonardo Arbiza, Cristopher V. Van Hout et al. · 2015 · PLoS ONE
  48. Identification of Selection Signals on the X-Chromosome in East Adriatic Sheep: A New Complementary Approach
    Mario Shihabi, Boris Lukić, Vlatka Čubrić-Ćurik, Vladimir Brajković, Milan Oršanić, Damir Ugarković, Luboš VOSTRÝ, Ino Čurik · 2022 · Frontiers in Genetics
  49. Parallel evolution in Crassostrea oysters along the latitudinal gradient is associated with variation in multiple genes involved in adipogenesis
    Wen Teng, Huiru Fu, Zhuanzhuan Li, Qian Zhang, Chengxun Xu, Yu Hong, Lingfeng Kong, Shikai Liu, Qi Li · 2023 · Molecular Ecology
  50. Whole-genome surveillance identifies markers of Plasmodium falciparum drug resistance and novel genomic regions under selection in Mozambique
    Erin S. Coonahan, Hunter Gage, Daisy Chen, Emília Virgínia Noormahomed, Titos Paulo Buene, Irina Mendes de Sousa, Kevan Akrami, Lúcia Chambal, Robert Turner Schooley, Elizabeth A. Winzeler et al. · 2023 · mBio
  51. Reintroduction of a Homocysteine Level-Associated Allele into East Asians by Neanderthal Introgression
    Ya Hu, Qiliang Ding, Yungang He, Shuhua Xu, Jin Li · 2015 · Molecular Biology and Evolution
  52. McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes
    Rémi Tournebize, Valérie Poncet, Mattias Jakobsson, Yves Vigouroux, Stéphanie Manel · 2018 · Molecular Ecology Resources
  53. Adaptations to water stress and pastoralism in the Turkana of northwest Kenya
    Amanda J. Lea, Ian V. Caldas, Kristina M. Garske, E. R. Gerlinger, Juan Pablo Arroyo, Echwa John, Michael Gurven, Carla Handley, John C. Kahumbu, Joseph Kamau et al. · 2025 · Science
  54. Genomic Signatures of Domestication Selection in the Australasian Snapper (Chrysophrys auratus)
    Jean-Paul Baesjou, Maren Wellenreuther · 2021 · Genes
  55. Novel alleles gained during the Beringian isolation period
    Sara D Niedbalski, Jeffrey C. Long · 2022 · Scientific Reports
  56. The demographic history of the wild crop relative Brachypodium distachyon is shaped by distinct past and present ecological niches
    Nikolaos Minadakis, Hefin Wyn Williams, Robert A. Horváth, Danka Caković, Christoph Stritt, Michael Thieme, Yann Bourgeois, Anne C. Roulin · 2023 · Peer Community Journal
  57. Genome-wide analyses reveal footprints of divergent selection and popping-related traits in CIMMYT’s maize inbred lines
    Jing Li, Delin Li, Cristian Zavala Espinosa, Viridiana Trejo Pastor, Awais Rasheed, Natalia Palacios Rojas, Jiankang Wang, Amalio Santacruz‐Varela, Natália Carolina de Almeida Silva, Patrick S. Schnable et al. · 2020 · Journal of Experimental Botany
  58. Genetic diversity and selection signatures in sheep breeds
    Julia Lisboa Rodrigues, Larissa Graciano Braga, Rafael Nakamura Watanabe, Flávio Schramm Schenkel, Donagh Pearse Berry, Marcos Eli Buzanskas, Danísio Prado Munari · 2025 · Journal of Applied Genetics
  59. Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary
    George Wanjala, Putri Kusuma Astuti, Zoltán Bagi, Nelly Kichamu, Péter Strausz, Szilvia Kusza · 2023 · Biology
  60. Identification of selection signatures in Capra hircus and Capra aegagrus in Iran
    Sadegh Taheri, Naghmeh Saedi, Saeed Zerehdaran, Ali Javadmanesh · 2023 · Animal Science Journal
  61. Reconstructing the ancestral gene pool to uncover the origins and genetic links of Hmong–Mien speakers
    Yang Gao, Xiaoxi Zhang, Hao Chen, Yan Lü, Sen Ma, Yajun Yang, Menghan Zhang, Shuhua Xu · 2024 · BMC Biology
  62. A whole genome scan reveals distinct features of selection in Zhaotong cattle of Yunnan province
    Yang Lyu, Xiwen Guan, Xinglong Xu, Pengfei Wang, Qiaoxian Li, Manjit Panigrahi, Jicai Zhang, Ningbo Chen, Bizhi Huang, Chuzhao Lei · 2023 · Animal Genetics
  63. Identifying signatures of positive selection in pigmentation genes in two South Asian populations
    Manjari Jonnalagadda, Neeraj Bharti, Yatish Patil, Shantanu Ozarkar, Sunitha Manjari K, Rajendra Joshi, Heather Norton · 2017 · American Journal of Human Biology
  64. Comparative genetic architectures of schizophrenia in East Asian and European populations
    Max Lam, Chia-Yen Chen, Zhiqiang Li, Alicia R. Martin, Julien Bryois, Xixian Ma, Helena Gaspar, Masashi Ikeda, Beben Benyamin, Brielin C. Brown et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  65. Breed Ancestry, Divergence, Admixture, and Selection Patterns of the Simbra Crossbreed
    Magriet A. van der Nest, Nompilo Lucia Hlongwane, Khanyisile Hadebe, Wai-Yin Chan, Nicolaas A. van der Merwe, Lieschen De Vos, Ben Greyling, Bhaveni B. Kooverjee, Pranisha Soma, Edgar Farai Dzomba et al. · 2021 · Frontiers in Genetics
  66. Identification of selection signatures and genetic diversity in the sheep
    Mustafa Karabaş, Onur Yılmaz · 2025 · Tropical Animal Health and Production
  67. Islands of runs of homozygosity indicate selection signatures in Ovis aries 6 (OAR6) of French dairy sheep
    Silvia Teresa Rodríguez‐Ramilo, Antônio Reverter, Andrés Legarra · 2021 · JDS Communications
  68. Genome-wide selection signatures in Pinzgau cattle
    Radovan Kasarda, Nina Moravčí­ková, Anna Trakovická, Gábor Mészáros, Ondrej KADLEČÍK · 2015 · Potravinarstvo Slovak Journal of Food Sciences
  69. Comparative genomics and signatures of selection in North Atlantic eels
    José Martín Pujolar, Magnus Wulff Jacobsen, Francesca Bertolini · 2022 · Marine Genomics
  70. The role of genomic signatures of directional selection and demographic history in the population structure of a marine teleost with high gene flow
    Peggy Weist, Sissel Jentoft, Ole K. Tørresen, Franziska Schade, Christophe Pampoulie, Uwe Krumme, Reinhold Hanel · 2022 · Ecology and Evolution
  71. Decoding the fibromelanosis locus complex chromosomal rearrangement of black-bone chicken: genetic differentiation, selective sweeps and protein-coding changes in Kadaknath chicken
    Sagar Sharad Shinde, Ashutosh Sharma, Nagarjun Vijay · 2023 · Frontiers in Genetics
  72. Genome-wide analyses of neonatal jaundice reveal a marked departure from adult bilirubin metabolism
    Pol Solé-Navais, Julius Juodakis, Karin Ytterberg, Xiaoping Wu, Jonathan P. Bradfield, Marc Vaudel, Abigail Leavitt LaBella, Øyvind Helgeland, Christopher J. Flatley, Frank Geller et al. · 2024 · Nature Communications
  73. Dissecting genomes of multiple yak populations: unveiling ancestry and high-altitude adaptation through whole-genome resequencing analysis
    Sheikh Firdous Ahmad, Munish Gangwar, Amit Kumar, Amod Kumar, Mahesh Shivanand Dige, Girish Kumar Jha, Gyanendra Kumar Gaur, Triveni Dutt · 2025 · BMC Genomics
  74. Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis
    Katarina Tengvall, Elisabeth Sundström, Chao Wang, Kerstin Bergvall, Ola Wallerman, Eric Pederson, Åsa Karlsson, Naomi D. Harvey, Sarah C Blott, Natasha J. Olby et al. · 2022 · Communications Biology
  75. Contrasting demographic histories revealed in two invasive populations of the dry rot fungus Serpula lacrymans
    Inger Skrede, Claude Murat, Jaqueline Hess, Sundy Maurice, Jørn Henrik Sønstebø, Annegret Kohler, Dominique Barry‐Etienne, Daniel C. Eastwood, Nils O.S. Högberg, Francis M Martin et al. · 2021 · Molecular Ecology
  76. Genetic Architecture and Signatures of Selection in the Caqueteño Creole (Colombian Native Cattle)
    Alejandra Maria Toro Ospina, Ana Cristina Herrera Ríos, Wellington Bizarria dos Santos, Gustavo Pimenta Schettini, Viviana H. Vallejo Aristizabal, Gilberto Tovar Claros, Edna Gicela Ortiz Morea · 2022 · Diversity
  77. A novel locus associated with decreased susceptibility of Plasmodium falciparum to lumefantrine and dihydroartemisinin has emerged and spread in Uganda
    Karamoko Niaré, Bersabeh Tafesse, Mayland Treat, Jacob M. Sadler, Martin Okitwi, Stephen Orena, Victor Asua, Oriana Kreutzfeld, Jenny Legac, Jacob Marglous et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  78. Natural selection on feralization genes contributed to the invasive spread of wild pigs throughout the United States
    Niek W. G. Barmentlo, Patrick G. Meirmans, William H. Stiver, Joseph G. Yarkovich, Blake E. McCann, Antoinette J. Piaggio, Dominic Wright, Timothy J. Smyser, Mirte Bosse · 2024 · Molecular Ecology
  79. Insights into the genomic homogeneity of Moroccan indigenous sheep breeds though the lens of runs of homozygosity
    Szilvia Kusza, Bouabid Badaoui, George Wanjala · 2024 · Scientific Reports
  80. Highly multiplexed molecular inversion probe panel in Plasmodium falciparum targeting common SNPs approximates whole-genome sequencing assessments for selection and relatedness
    Karamoko Niaré, Rebecca Crudale, Abebe Alemu Fola, Neeva Wernsman Young, Victor Asua, Melissa D. Conrad, Pierre Gashema, Anita Ghansah, Stan Hangi, Deus S. Ishengoma et al. · 2025 · Frontiers in Genetics
  81. An Evolutionary Insight Into the Heterogeneous Severity Pattern of the SARS-CoV-2 Infection
    Rabail Zehra Raza, Sumra Wajid Abbasi · 2022 · Frontiers in Genetics
  82. Genetic responses in sexual diploid and unisexual triploid goldfish (Carassius auratus) introduced into a high‐altitude environment
    Xiu Feng, Shenglin Liu, Xiaoyun Sui, Yifeng Chen, Ren Zhu, Yintao Jia, Jingou Tong, Xiaomu Yu, Chunlong Liu, Michael M. Hansen · 2023 · Molecular Ecology
  83. Predicting Environmental and Ecological Drivers of Human Population Structure
    Evlyn Pless, Anders M. Eckburg, Brenna M. Henn · 2023 · Molecular Biology and Evolution
  84. Adaptive evolution of interleukin-3 (IL3), a gene associated with brain volume variation in general human populations
    Ming Li, Liang Huang, Kaiqin Li, Yongxia Huo, Chunhui Chen, Jinkai Wang, Jiewei Liu, Zhenwu Luo, Chuansheng Chen, Qi Dong et al. · 2016 · Human Genetics
  85. Genomic analysis of global Plasmodium vivax populations reveals insights into the evolution of drug resistance
    Gabrielle C. Ngwana-Joseph, Jody Emile Phelan, Emilia Mańko, Jamille Gregório Dombrowski, Simone da Silva Santos, Martha Cecília Suárez-Mútis, Gabriel Jaime Vélez Tobón, Alberto Tobón-Castaño, Ricardo Luiz Dantas Machado, Cláudio Romero Farias Marinho et al. · 2024 · Nature Communications
  86. Detecting the footprint of selection on the genome of Girgentana goat, a popular ancient breed
    Andrea Criscione, Slim Ben Jemaa, G. Chessari, Silvano Riggio, Serena Tumino, Gaetano Cammilleri, A. Lastra, F. Carta, Maria Teresa Sardina, Baldassare Portolano et al. · 2025 · animal
  87. Genome-wide genetic characterization and selection signatures in Anatolian Merino sheep
    Taki Karslı · 2025 · Archives animal breeding/Archiv für Tierzucht
  88. Neanderthal adaptive introgression shaped LCT enhancer region diversity without linking to lactase persistence in East Asian populations
    Xixian Ma, Yan Lü, Mark Stoneking, Shuhua Xu · 2025 · Proceedings of the National Academy of Sciences
  89. Genomic diversity and selection signatures in Asian Zebu Cattle: insights into adaptation and genetic erosion
    Tafara Kundai Mavunga, Johann Sölkner, Gábor Mészáros, Rudolf Pichler, Saravanan Ramasamy, Vandana Manomohan, Satish Kumar, Kamran Abbas, Tanveer Hussain, Masroor Ellahi Babar et al. · 2025 · Scientific Reports
  90. EBV strain interacts with host HLA to drive nasopharyngeal carcinoma risk
    Yanhong Chen, Jingtong Liang, Wanlin Zhang, Xinyu Zhang, Xinyi Zhang, Ching‐Yuan Wang, Fei Yao, Shanshan Zhang, Xiang Zhou, Weimin Ye et al. · 2026 · Nature
  91. Effects of the domestic thyroid stimulating hormone receptor (TSHR) variant on the hypothalamic-pituitary-thyroid axis and behavior in chicken
    Amir Fallahshahroudi, Martin Johnsson, Enrico Sorato, S. J. Kumari A. Ubhayasekera, Jonas Bergquist, Jordi Altimiras, Per Jensen · 2021 · Genetics
  92. R-locus for roaned coat is associated with a tandem duplication in an intronic region of USH2A in dogs and also contributes to Dalmatian spotting
    Takeshi Kawakami, Meghan K. Jensen, Andrea Slavney, Petra E. Deane‐Coe, Ausra Milano, Vandana Raghavan, Brett Ford, Erin T. Chu, Aaron J. Sams, Adam R. Boyko · 2021 · PLoS ONE
  93. Genome‐wide scan for signatures of selection in the Brangus cattle genome
    Paulo Álvarez Cecco, A. Rogberg‐Muñoz, Marianela Balbi, Martín Bonamy, Sebastián Munilla, Natalia Soledad Forneris, Pilar Peral García, R. J. C. Cantet, Guillermo Giovambattista, María Elena Fernández · 2022 · Journal of Animal Breeding and Genetics
  94. Genomic analysis of Plasmodium falciparum isolates across different altitudinal zones along the slope of Mount Cameroon
    Tobias Obejum Apinjoh, Marcelus U. Ajonina, Deriba Abera, Hanesh F. Chi, Roland B. Tata, Regina N. Mugri, Lemu Golassa, Eric Akum Achidi, Alfred Amambua‐Ngwa · 2023 · Frontiers in Malaria
  95. Natural Selection Signatures in the Hondo and Ryukyu Japanese Subpopulations
    Xiaoxi Liu, Masatoshi Matsunami, Momoko Horikoshi, Shuji Ito, Yuki Ishikawa, Kunihiko Suzuki, Yukihide Momozawa, Shumpei Niida, Ryosuke Kimura, Kouichi Ozaki et al. · 2023 · Molecular Biology and Evolution
  96. Dissecting the genomic regions of selection on the X chromosome in different cattle breeds
    Divya Rajawat, Manjit Panigrahi, Sonali Sonejita Nayak, Bharat Bhushan, Bishnu Prasad Mishra, Triveni Dutt · 2024 · 3 Biotech
  97. Anthropogenic events and responses to environmental stress are shaping the genomes of Ethiopian indigenous goats
    Shumuye Belay, Gurja Belay, Helen Nigussie, Abulgasim Ahbara, Abdulfatai Tijjani, Tadelle Dessie, Getinet Mekuriaw Tarekegn, Jianlin Han, Siobhan M. Mor, Helina Solomon Woldekiros et al. · 2024 · Scientific Reports
  98. Population genomics of Plasmodium ovale species in sub-Saharan Africa
    Kelly Carey-Ewend, Zachary R. Popkin-Hall, Alfred Simkin, Meredith Muller, Christopher M. Hennelly, Wenqiao He, Kara A. Moser, Claudia Gaither, Karamoko Niaré, Farhang F. Aghakhanian et al. · 2024 · Nature Communications
  99. The Genome of Lolium multiflorum Reveals the Genetic Architecture of Paraquat Resistance
    Caio A. C. G. Brunharo, Aidan W. Short, Lucas Kopecky Bobadilla, Matthew A. Streisfeld · 2025 · Molecular Ecology
  100. A brief history and popularity of methods and tools used to estimate micro‐evolutionary forces
    Jonathan H. Kidner, Panagiotis Theodorou, Jan O. Engler, Martin Taubert, Martin Husemann · 2021 · Ecology and Evolution