rehh : an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

Cited by (554)

Items 101–200 of 554

1. Comparing genomic signatures of domestication in two Atlantic salmon ( Salmo salar L.) populations with different geographical origins
   María E. López, Laura Benestan, Jean‐Sébastien Moore, Charles Perrier, John Gilbey, Alex Di Genova, Alejandro Maass, Diego Diaz-Domínguez, Jean P. Lhorente, Katharina Correa et al. · 2018 · Evolutionary Applications
2. Population Genetics and Signatures of Selection in Early Neolithic European Farmers
   Ainash Childebayeva, Adam B. Rohrlach, Rodrigo Barquera, Maïté Rivollat, Franziska Aron, András Szolek, Oliver Kohlbacher, Nicole Nicklisch, Kurt W. Alt, Detlef Gronenborn et al. · 2022 · Molecular Biology and Evolution
3. HaploBlocker: Creation of Subgroup-Specific Haplotype Blocks and Libraries
   Torsten Pook, Martin Schlather, Gustavo de los Campos, Manfred Mayer, Chris Carolin Schoen, Henner Simianer · 2019 · Genetics
4. The roles of balancing selection and recombination in the evolution of rattlesnake venom
   Drew R. Schield, Blair W. Perry, Richard H. Jr. Adams, Matthew L. Holding, Zachary L. Nikolakis, Siddharth S. Gopalan, Cara Francesca Smith, Joshua M. Parker, Jesse M. Meik, Michael DeGiorgio et al. · 2022 · Nature Ecology & Evolution
5. Adaptive reduction of male gamete number in the selfing plant Arabidopsis thaliana
   Takashi Tsuchimatsu, Hiroyuki Kakui, Misako Yamazaki, Cindy Marona, Hiroki Tsutsui, Afif Hedhly, Dazhe Meng, Yutaka Sato, Thomas Städler, Ueli Grossniklaus et al. · 2020 · Nature Communications
6. Detecting selection using extended haplotype homozygosity (EHH)-based statistics in unphased or unpolarized data
   Alexander Klassmann, Renaud Vitalis, Mathieu Gautier · 2022 · PLoS ONE
7. Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa)
   Qiang He, Jie Yu, Tae-Sung Kim, Yoo‐Hyun Cho, Young-Sang Lee, Yong‐Jin Park · 2015 · PLoS ONE
8. Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure
   Damarius S. Fleming, Steffen Weigend, Henner Simianer, Annett Weigend, Max F. Rothschild, Carl J. Schmidt, Christopher M. Ashwell, Mike Persia, James Mark Reecy, Susan Joy Lamont · 2017 · G3 Genes Genomes Genetics
9. Domestication rewired gene expression and nucleotide diversity patterns in tomato
   Christopher Sauvage, Andréa Rau, Charlotte Aichholz, Joël Chadœuf, Gautier Sarah, Manuel Ruíz, Sylvain Santoni, Mathilde Causse, Jacques David, Sylvain Glémin · 2017 · The Plant Journal
10. A Composite-Likelihood Method for Detecting Incomplete Selective Sweep from Population Genomic Data
    Ha My T. Vy, Yuseob Kim · 2015 · Genetics
11. Consistent signatures of selection from genomic analysis of pairs of temporal and spatial Plasmodium falciparum populations from The Gambia
    Alfred Amambua‐Ngwa, David J. Jeffries, Roberto Amato, Archibald Kwame Worwui, Karim Mané, Sukai Ceesay, Haddy Nyang, Davis C. Nwakanma, Joseph Okebe, Dominic P. Kwiatkowski et al. · 2018 · Scientific Reports
12. Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres
    María E. López, Tyler P. Linderoth, Ashie Norris, Jean P. Lhorente, Roberto Neira, José Manuel Yañez · 2019 · Frontiers in Genetics
13. Sardinians Genetic Background Explained by Runs of Homozygosity and Genomic Regions under Positive Selection
    Cornelia Di Gaetano, Giovanni Fiorito, Maria Francesca Ortu, Fabio Rosa, Simonetta Guarrera, Barbara Pardini, Daniele Cusi, Francesca Frau, Cristina Barlassina, Chiara Troffa et al. · 2014 · PLoS ONE
14. The population genomic landscape of human genetic structure, admixture history and local adaptation in Peninsular Malaysia
    Lian Deng, Boon‐Peng Hoh, Dongsheng Lu, Ruiqing Fu, Maude Elvira Phipps, Shilin Li, Ab Rajab Nur‐Shafawati, Wan Isa Hatin, Endom Ismail, Siti Shuhada Mokhtar et al. · 2014 · Human Genetics
15. Evidence of positive selection towards Zebuine haplotypes in the BoLA region of Brangus cattle
    Daniel Estanislao Goszczynski, Claudia Corbi-Botto, H.M. Durand, A. Rogberg‐Muñoz, Sebastián Munilla, Pilar Peral García, R. J. C. Cantet, Guillermo Giovambattista · 2017 · animal
16. Coherent synthesis of genomic associations with phenotypes and home environments
    Jesse R. Lasky, Brenna R. Forester, Matthew L. Reimherr · 2017 · Molecular Ecology Resources
17. Natural variation in stochastic photoreceptor specification and color preference in Drosophila
    Caitlin Anderson, India Reiss, Cyrus Zhou, Annie Cho, Haziq F. Siddiqi, Benjamin H. Mormann, Cameron M. Avelis, Peter DeFord, Alan O. Bergland, Elijah Roberts et al. · 2017 · eLife
18. Genomic scans for selective sweeps through haplotype homozygosity and allelic fixation in 14 indigenous sheep breeds from Middle East and South Asia
    Sirous Eydivandi, Mahmoud Amiri Roudbar, Mohammad Osman Karimi, Goutam Sahana · 2021 · Scientific Reports
19. Functional EPAS1 / HIF2A missense variant is associated with hematocrit in Andean highlanders
    Elijah S. Lawrence, Wanjun Gu, Ryan J. Bohlender, Cecilia Anza‐Ramirez, Amy M. Cole, James J. Yu, Hao Hu, Erica C. Heinrich, Katie A. O’Brien, Carlos A. Vasquez et al. · 2024 · Science Advances
20. How old are quantitative trait loci and how widely do they segregate?
    Kathryn E. Kemper, Ben J. Hayes, Hans D. Daetwyler, Michael Edward Goddard · 2015 · Journal of Animal Breeding and Genetics
21. Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia
    Laure Ségurel, Frédéric Austerlitz, Bruno Toupance, Mathieu Gautier, Joanna L. Kelley, Patrick Pasquet, Christine Lonjou, Myriam Georges, Sarah Amandine Caroline Voisin, Corinne Cruaud et al. · 2013 · European Journal of Human Genetics
22. Draft genome sequence of an eliteDurapalm and whole-genome patterns of DNA variation in oil palm
    Jingjing Jin, May Lee, Bin Bai, Yanwei Sun, Jing Qu, Rahmadsyah Rahmadsyah, Yuzer Alfiko, Chin Huat Lim, Antonius Suwanto, Maria Sugiharti et al. · 2016 · DNA Research
23. Genomic adaptation of admixed dairy cattle in East Africa
    Eui-Soo Kim, Max F. Rothschild · 2014 · Frontiers in Genetics
24. Genome-wide scans reveal variants at EDAR predominantly affecting hair straightness in Han Chinese and Uyghur populations
    Sijie Wu, Jingze Tan, Yajun Yang, Qianqian Peng, Manfei Zhang, Jinxi Li, Dongsheng Lu, Yu Liu, Haiyi Lou, Qidi Feng et al. · 2016 · Human Genetics
25. Analysis of porcine body size variation using re-sequencing data of miniature and large pigs
    Christian Reimer, Carl‐Johan Rubin, Ahmad Sharifi, Ngoc-Thuy Ha, Steffen Weigend, K.-H. Waldmann, O. Distl, Sameer D. Pant, Merete Fredholm, Martin Schlather et al. · 2018 · BMC Genomics
26. Haptoglobin (HP) and Haptoglobin-related protein (HPR) copy number variation, natural selection, and trypanosomiasis
    Robert J. Hardwick, Anne Ménard, Manuela Sironi, Jacqueline Milet, André Garcia, Claude Sese, Fengtang Yang, Beiyuan Fu, David Courtin, Edward J. Hollox · 2013 · Human Genetics
27. An Evolutionary Analysis of Antigen Processing and Presentation across Different Timescales Reveals Pervasive Selection
    Diego Forni, Rachele Cagliani, Claudia Tresoldi, Uberto Pozzoli, Luca DE GIOIA, Giulia Filippi, Stefania Riva, Giorgia Menozzi, M. Colleoni, Mara Biasin et al. · 2014 · PLoS Genetics
28. Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses
    George Mutani Msalya, Eui-Soo Kim, Emmanuel L. K. Laisser, Maulilio John Kipanyula, Esron Daniel Karimuribo, L.J.M. Kusiluka, Sebastian Wilson Chenyambuga, Max F. Rothschild · 2017 · PLoS ONE
29. Alopecia areata susceptibility variant in MHC region impacts expressions of genes contributing to hair keratinization and is involved in hair loss
    Akira Oka, Atsushi Takagi, Etsuko Komiyama, Nagisa Yoshihara, Shuhei Mano, Kazuyoshi Hosomichi, Shingo Suzuki, Yuko Haida, Nami Motosugi, Tomomi Hatanaka et al. · 2020 · EBioMedicine
30. Genome-wide insights on gastrointestinal nematode resistance in autochthonous Tunisian sheep
    Abulgasim Ahbara, Mariem Rouatbi, Mohamed Gharbi, Mourad Rekik, Aynalem Haile, Barbara Rischkowsky, Joram M. Mwacharo · 2021 · Scientific Reports
31. Identification of Candidate Signature Genes and Key Regulators Associated With Trypanotolerance in the Sheko Breed
    Mekonnen, Yonatan Ayalew, Gültas, Mehmet, Effa, Kefena, Hanotte, Olivier, Schmitt, Armin O. · 2019 · Frontiers in Genetics
32. Conservation Genomic Analysis of the Croatian Indigenous Black Slavonian and Turopolje Pig Breeds
    Boris Lukić, Maja Ferenčaković, Dragica Šalamon, Mato Čačić, Vesna Orehovački, Laura Iacolina, Ino Čurik, Vlatka Čubrić-Ćurik · 2020 · Frontiers in Genetics
33. Genetic adaptation of the human circadian clock to day-length latitudinal variations and relevance for affective disorders
    Diego Forni, Uberto Pozzoli, Rachele Cagliani, Claudia Tresoldi, Giorgia Menozzi, Stefania Riva, Franca Rosa Guerini, Giacomo P. Comi, Elisabetta Bolognesi, Nereo Bresolin et al. · 2014 · Genome biology
34. Detecting selection signatures between Duroc and Duroc synthetic pig populations using high‐density SNP chip
    Zewdu Edea, J.‐K. Hong, Jong‐Hyun Jung, D.‐W. Kim, Yong‐Min Kim, E.‐S. Kim, Sung-Sub Shin, Y. C. Jung, K.‐S. Kim · 2017 · Animal Genetics
35. Genomic signatures of adaptive introgression and environmental adaptation in the Sheko cattle of southwest Ethiopia
    Hussain M. Bahbahani, Arwa Afana, David Wragg · 2018 · PLoS ONE
36. Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development
    Craig W. Duffy, Alfred Amambua‐Ngwa, Ambroise Dioum Ahouidi, Mahamadou Diakité, Gordon A. Awandare, Hampaté Bâ, Sarah J. Tarr, Lee Murray, Lindsay B. Stewart, Umberto D’Alessandro et al. · 2018 · Scientific Reports
37. Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites
    Hanif Samad, Francesc Coll, Mark D. Preston, Harold Ocholla, Rick M. Fairhurst, Taane Gregory Clark · 2015 · PLoS Genetics
38. Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity
    Craig W. Duffy, Samuel Assefa, James Abugri, Nicholas Amoako, Seth Owusu‐Agyei, Thomas Anyorigiya, Bronwyn L. MacInnis, Dominic P. Kwiatkowski, David J. Conway, Gordon A. Awandare · 2015 · BMC Genomics
39. Analysis of selection signatures reveals important insights into the adaptability of high-altitude Indian sheep breed Changthangi
    Sheikh Firdous Ahmad, Arnav Mehrotra, Sona Charles, Nazir Ahmad Ganai · 2021 · Gene
40. Sequencing rare and common APOL1 coding variants to determine kidney disease risk
    Sophie Limou, George W. Nelson, Laurence Lecordier, Ping An, Colm Ó’hUigín, Victor A. David, Elizabeth A. Binns-Roemer, Wilfried M. Guiblet, Tarás K. Oleksyk, Etienne Pays et al. · 2015 · Kidney International
41. Identification of signatures of selection for intramuscular fat and backfat thickness in two Duroc populations1
    Eui-Soo Kim, Roger Ros‐Freixedes, Ramona N. Pena, Tom J. Baas, J. Estany, Max F. Rothschild · 2015 · Journal of Animal Science
42. Complex Coding and Regulatory Polymorphisms in a Restriction Factor Determine the Susceptibility of Drosophila to Viral Infection
    Chuan Cao, Rodrigo Cogni, Vincent Barbier, Francis M. Jiggins · 2017 · Genetics
43. Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle
    Slim Ben Jemaa, Gabriele Senczuk, Elena Ciani, Roberta Ciampolini, G. Catillo, Mekki Boussaha, Fabio Pilla, Baldassare Portolano, Salvatore Mastrangelo · 2021 · Frontiers in Genetics
44. Detecting selection using extended haplotype homozygosity (EHH)-based statistics in unphased or unpolarized data
    Alexander Klassmann, Mathieu Gautier · 2022 · Kölner Universitäts PublikationsServer (Universität zu Köln)
45. A chromosome-level reference genome and pangenome for barn swallow population genomics
    Simona Secomandi, Guido Roberto Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Ann L. Abueg, Jennifer Balacco, Manuela Caprioli, William Chow, Claúdio Ciofi et al. · 2023 · Cell Reports
46. Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution
    Craig W. Duffy, Hampaté Bâ, Samuel Assefa, Ambroise Dioum Ahouidi, Yacine Boubou Deh, Abderahmane Tandia, Freja Cordelia Møller Kirsebom, Dominic P. Kwiatkowski, David J. Conway · 2017 · Molecular Ecology
47. Human-Mediated Introgression of Haplotypes in a Modern Dairy Cattle Breed
    Qianqian Zhang, M.P.L. Calus, Mirte Bosse, Goutam Sahana, Mogens Sandø Lund, Bernt Guldbrandtsen · 2018 · Genetics
48. Transposable elements cause the loss of self‐incompatibility in citrus
    Jianbing Hu, Chenchen Liu, Zezhen Du, Furong Guo, Dan Song, Nan Wang, Zhuangmin Wei, Jingdong Jiang, Zonghong Cao, Chunmei Shi et al. · 2023 · Plant Biotechnology Journal
49. High-resolution analysis of selection sweeps identified between fine-wool Merino and coarse-wool Churra sheep breeds
    Beatriz Gutiérrez‐Gil, Cristina Esteban‐Blanco, Pamela Wiener, Praveen Chitneedi, Aroa Suárez‐Vega, J. J. Arranz · 2017 · Genetics Selection Evolution
50. Identifying loci with breeding potential across temperate and tropical adaptation via EigenGWAS and EnvGWAS
    Jing Li, Guo‐Bo Chen, Awais Rasheed, Delin Li, Kai Sonder, Cristian Zavala Espinosa, Jiankang Wang, Denise E. Costich, Patrick S. Schnable, Sarah Hearne et al. · 2019 · Molecular Ecology
51. Genome‐wide detection of signatures of selection in three Valdostana cattle populations
    Salvatore Mastrangelo, Slim Ben Jemaa, Elena Ciani, Gianluca Sottile, Angelo Moscarelli, Mekki Boussaha, Marina Montedoro, Fabio Pilla, Martino Cassandro · 2020 · Journal of Animal Breeding and Genetics
52. Genomic Footprints in Selected and Unselected Beef Cattle Breeds in Korea
    Dajeong Lim, Eva M. Strucken, Bong‐Hwan Choi, Han‐Ha Chai, Yong Min Cho, Gul Won Jang, Tae Hun Kim, Cedric Gondro, Seung Hwan Lee · 2016 · PLoS ONE
53. Genomic data as the “hitchhiker's guide” to cattle adaptation: tracking the milestones of past selection in the bovine genome
    Yuri Tani Utsunomiya, Ana M. Pérez O’Brien, Tad Stewart Sonstegard, Johann Sölkner, José F. Garcia · 2015 · Frontiers in Genetics
54. Using deep learning to identify recent positive selection in malaria parasite sequence data
    Wouter Deelder, Ernest Diez Benavente, Jody Emile Phelan, Emilia Mańko, Susana G. Campino, Luigi Palla, Taane Gregory Clark · 2021 · Malaria Journal
55. Genetic diversity and population structure of six autochthonous pig breeds from Croatia, Serbia, and Slovenia
    Minja Zorc, Dubravko Škorput, Kristina Gvozdanović, Polona Margeta, Danijel Karolyi, Zoran Luković, Krešimir Salajpal, Radomir Savić, María Muñoz, Samuele Bovo et al. · 2022 · Genetics Selection Evolution
56. Differing Evolutionary Histories of the ACTN3*R577X Polymorphism among the Major Human Geographic Groups
    Carlos Eduardo G. Amorim, Víctor Acuña-Alonzo, Francisco M. Salzano, María Cátira Bortolini, Tábita Hünemeier · 2015 · PLoS ONE
57. Selection scan reveals three new loci related to high altitude adaptation in Native Andeans
    Vanessa Cristina Jacovas, Cainã M. Couto-Silva, Kelly Nunes, Renan Barbosa Lemes, Marcelo Zagonel-Oliveira, Francisco M. Salzano, María Cátira Bortolini, Tábita Hünemeier · 2018 · Scientific Reports
58. Analysis of 206 whole‐genome resequencing reveals selection signatures associated with breed‐specific traits in Hu sheep
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59. Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum
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60. Selection signatures in Canchim beef cattle
    Ismael Urbinati, Nedenia Bonvino Stafuzza, Marcos T. Oliveira, T.C.S. Chud, Roberto Hiroshi Higa, Luciana Correia de Almeida Regitano, M. M. de Alencar, Marcos Eli Buzanskas, Danísio Prado Munari · 2016 · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology
61. Genetic signatures of gene flow and malaria-driven natural selection in sub-Saharan populations of the "endemic Burkitt Lymphoma belt"
    Mateus Henrique Gouveia, Andrew W. Bergen, Víctor Borda, Kelly Nunes, Thiago Peixoto Leal, Martin D. Ogwang, Edward D. Yeboah, James Edward Mensah, Tobias Kinyera, Isaac Omara Otim et al. · 2019 · PLoS Genetics
62. The Valdostana goat: a genome-wide investigation of the distinctiveness of its selective sweep regions
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63. Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans
    Sijie Wu, Manfei Zhang, Xinzhou Yang, Fuduan Peng, Juan Zhang, Jingze Tan, Yajun Yang, Lina Wang, Yanan Hu, Qianqian Peng et al. · 2018 · PLoS Genetics
64. Genomes reveal marked differences in the adaptive evolution between orangutan species
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65. A chromosome-level genome of the human blood fluke Schistosoma japonicum identifies the genomic basis of host-switching
    Fang Luo, Wen‐Bin Yang, Mingbo Yin, Xiaojin Mo, Yuhong Pang, Chengsong Sun, Bingkuan Zhu, Wei Zhang, Cun Yi, Zhidan Li et al. · 2022 · Cell Reports
66. A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals
    Niko P. Popitsch, Christian D. Huber, Ilana Buchumenski, Eli Eisenberg, Michael F. Jantsch, Arndt von Haeseler, Miguel Gallach · 2020 · Genome Biology and Evolution
67. Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle
    Liu, Yuqiang, Xu, Lingyang, Yang, Liu, Zhao, Guoyao, Li, Junya, Liu, Dewu, Li, Yaokun · 2020 · Frontiers in Genetics
68. Differential natural selection of human zinc transporter genes between african and non-African populations.
    Zhang, Chao, Li, Jing, Tian, Lei, Lu, Dongsheng, Yuan, Kai, Yuan, Yuan, Xu, Shuhua · 2015 · Scientific Reports
69. Characterization of the genome and transcriptome of the blue tit C yanistes caeruleus: polymorphisms, sex‐biased expression and selection signals
    Jakob C. Mueller, Heiner Kuhl, Bernd Timmermann, Bart Kempenaers · 2015 · Molecular Ecology Resources
70. Population genetic analysis of the Plasmodium falciparum circumsporozoite protein in two distinct ecological regions in Ghana
    Elikplim A. Amegashie, Lucas Naam-Kayagre Amenga-Etego, Courage Adobor, Peter Ogoti, Kevin Mbogo, Alfred Amambua‐Ngwa, Anita Ghansah · 2020 · Malaria Journal
71. A selection signatures study among Middle Eastern and European sheep breeds
    Sirous Eydivandi, Mahmoud Amiri Roudbar, Siavash Salek Ardestani, Mehdi M. Momen, Goutam Sahana · 2021 · Journal of Animal Breeding and Genetics
72. Recent positive selection signatures reveal phenotypic evolution in the Han Chinese population
    Huaxia Luo, Peng Zhang, Wanyu Zhang, Yu Zheng, Di Hao, Yirong Shi, Yiwei Niu, Tingrui Song, Yanyan Li, Shilei Zhao et al. · 2023 · 中国科学通报：英文版
73. Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse
    Heebal Kim, T. Lee, W. Park, J. W. Lee, J. Kim, B.-Y. Lee, H. Ahn, S. Moon, S. Cho, K.T. Do et al. · 2013 · DNA Research
74. Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
    Yann Bourgeois, Christoph Stritt, Jean‐Claude Walser, Sean Gordon, John P. Vogel, Anne C. Roulin · 2018 · The Plant Journal
75. Detecting Genetic Ancestry and Adaptation in the Taiwanese Han People
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76. Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data
    Sonali Sonejita Nayak, Manjit Panigrahi, Divya Rajawat, Kanika Ghildiyal, Anurodh Sharma, Subhashree Parida, Bharat Bhushan, Bina Mishra, Triveni Dutt · 2023 · Mammalian Genome
77. Coala: an R framework for coalescent simulation
    Paul R. Staab, Dirk Metzler · 2016 · Bioinformatics
78. Antimicrobial Functions of Lactoferrin Promote Genetic Conflicts in Ancient Primates and Modern Humans
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79. Long-Term Artificial Selection of Hanwoo (Korean) Cattle Left Genetic Signatures for the Breeding Traits and Has Altered the Genomic Structure
    Seo, Dongwon, Lee, Doo Ho, Jin, Shil, Won, Jung Il, Lim, Dajeong, Park, Mina, Kim, Tae Hun, Lee, Hak Kyo, Kim, Sidong, Choi, Inchul et al. · 2022 · Scientific Reports
80. Genomics reveal population structure, evolutionary history, and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus
    Evelien de Greef, Anthony L. Einfeldt, Patrick J. O. Miller, Steven H. Ferguson, Colin J. Garroway, Kyle J. Lefort, Ian G. Paterson, Paul Bentzen, Laura Feyrer · 2022 · Molecular Ecology
81. Whole‐genome assembly and resequencing reveal genomic imprint and key genes of rapid domestication in narrow‐leafed lupin
    Penghao Wang, Gaofeng Zhou, Jianbo Jian, Huaan Yang, Daniel Renshaw, Matthew K. Aubert, Jonathan R. Clements, Tianhua He, Mark W. Sweetingham, Chengdao Li · 2020 · The Plant Journal
82. Selection Signature Analyses Revealed Genes Associated With Adaptation, Production, and Reproduction in Selected Goat Breeds in Kenya
    R.W. Waineina, Tobias Otieno Okeno, Evans Deyie Ilatsia, Kiplangat Ngeno · 2022 · Frontiers in Genetics
83. Detecting Recent Positive Selection with High Accuracy and Reliability by Conditional Coalescent Tree
    Minxian Wang, Xin Huang, Ran Li, Hongyang Xu, Jin Li, Yungang He · 2014 · Molecular Biology and Evolution
84. Selection signatures for high altitude adaptation in livestock: A review
    Manish Tiwari, Gayatri Gujar, Chikamagalore Gopalakrishna Shashank, Siriluck Ponsuksili · 2024 · Gene
85. Genetic diversity and divergence among Korean cattle breeds assessed using a BovineHD single-nucleotide polymorphism chip
    Seungchang Kim, Hyun Sub Cheong, Hyoung Doo Shin, Sung-Soo Lee, Hee-Jong Roh, Dayeon Jeon, Chang-Yeon Cho · 2018 · Asian-Australasian Journal of Animal Sciences
86. Genomic Divergence in Swedish Warmblood Horses Selected for Equestrian Disciplines
    Michela Ablondi, S. Eriksson, Sasha Tetu, Alberto Sabbioni, Å. Viklund, Sofia Mikko · 2019 · Genes
87. Comparison of Selection Signatures between Korean Native and Commercial Chickens Using 600K SNP Array Data
    Sunghyun Cho, Prabuddha Manjula, Minjun Kim, Eunjin Cho, Dooho Lee, Seung Hwan Lee, Jun Heon Lee, Dongwon Seo · 2021 · Genes
88. Identifying Selection Signatures for Backfat Thickness in Yorkshire Pigs Highlights New Regions Affecting Fat Metabolism
    Haoran Ma, Saixian Zhang, Kaili Zhang, Huiwen Zhan, Xia Peng, Shengsong Xie, Xinyun Li, Shuhong Zhao, Yunlong Ma · 2019 · Genes
89. Identifying artificial selection signals in the chicken genome
    Yunlong Ma, Lantao Gu, Liubin Yang, Chenghao Sun, Shengsong Xie, Chengchi Fang, Yangzhang Gong, Shijun Li · 2018 · PLoS ONE
90. Detection of selection signatures in the genome of a farmed population of anadromous rainbow trout (Oncorhynchus mykiss)
    María I. Cádiz, María E. López, Diego Diaz-Domínguez, Giovanna Cáceres, Rodrigo Marín-Nahuelpi, Daniel Gomez‐Uchida, Cristian B. Canales‐Aguirre, Pablo Orozco‐terWengel, José Manuel Yañez · 2021 · Genomics
91. Resequencing and Signatures of Selective Scans Point to Candidate Genetic Variants for Hair Length Traits in Long-Haired and Normal-Haired Tianzhu White Yak
    Qi Bao, Xiaoming Ma, Congjun Jia, Xiaoyun Wu, Yi Wu, Guangyao Meng, Pengjia Bao, Min Chu, Xian Guo, Chunnian Liang et al. · 2022 · Frontiers in Genetics
92. Genetic differentiation following recent domestication events: A study of farmed Nile tilapia (Oreochromis niloticus) populations
    Agustin Barría, Carolina Peñaloza, Athina Papadopoulou, Mahirah Mahmuddin, Andrea Doeschl‐Wilson, John Benzie, Ross D. Houston, Pamela Wiener · 2023 · Evolutionary Applications
93. Identification of candidate protective variants for common diseases and evaluation of their protective potential
    Joe M. Butler, Neil Hall, Niro Narendran, Yit Chiun Yang, Luminita Paraoan · 2017 · BMC Genomics
94. The great tit HapMap project: A continental‐scale analysis of genomic variation in a songbird
    Lewis G. Spurgin, Mirte Bosse, Frank Adriaensen, Tamer Albayrak, Christos Barboutis, Eduardo Jorge Belda, Andrey Bushuev, Jacopo Giuseppe Cecere, Anne Charmantier, Mariusz Cichoń et al. · 2024 · Molecular Ecology Resources
95. Whole Genome Sequencing Reveals Signals of Adaptive Admixture in Creole Cattle
    Ben-Jemaa, Slim, Adam, Gabriele, Boussaha, Mekki, Bardou, Philippe, Klopp, Christophe, Mandonnet, Nathalie, Naves, Michel · 2023 · Scientific Reports
96. Homo sapiens-Specific Binding Site Variants within Brain Exclusive Enhancers Are Subject to Accelerated Divergence across Human Population
    Rabail Zehra Raza, Amir Ali Abbasi · 2018 · Genome Biology and Evolution
97. Inferring Signatures of Positive Selection in Whole-Genome Sequencing Data: An Overview of Haplotype-Based Methods
    Paolo Abondio, Elisabetta Cilli, Donata Luiselli · 2022 · Genes
98. Aberrant Time to Most Recent Common Ancestor as a Signature of Natural Selection
    Haley Hunter-Zinck, Andrew G. Clark · 2015 · Molecular Biology and Evolution
99. Fluctuating and Geographically Specific Selection Characterize Rapid Evolution of the Human KIR Region
    Danillo G. Augusto, Paul J. Norman, Ravi Dandekar, Jill A. Hollenbach · 2019 · Frontiers in Immunology
100. Genome-Wide Analysis of Genetic Diversity in Plasmodium falciparum Isolates From China–Myanmar Border
     Run Ye, Yini Tian, Yufu Huang, Yilong Zhang, Jian Wang, Xiaodong Sun, Hongning Zhou, Dongmei Zhang, Weiqing Pan · 2019 · Frontiers in Genetics