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DoGSiteScorer: a web server for automatic binding site prediction, analysis and druggability assessment
Open accessAbstract
Motivation: Many drug discovery projects fail because the underlying target is finally found to be undruggable. Progress in structure elucidation of proteins now opens up a route to automatic structure-based target assessment. DoGSiteScorer is a newly developed automatic tool combining pocket prediction, characterization and druggability estimation and is now available through a web server. Availability: The DoGSiteScorer web server is freely available for academic use at http://dogsite.zbh.uni-hamburg.de Contact: rarey@zbh.uni-hamburg.de.
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Citations
Cited by
Li, H., Leung, K., Wong, M., & Ballester, P. J. (2015) · Molecular Informatics · doi:10.1002/minf.201400132 · Cited by 252
Juvvadi, P. R., Fox, D., Bobay, B. G., Hoy, M. J., Gobeil, S. M. C., Venters, R. A., Chang, Z., Lin, J. J., Averette, A. F., Cole, D. C., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-12199-1 · Cited by 116
Borsatto, A., Akkad, O., Galdadas, I., Ma, S., Damfo, S., Haider, S., Kozielski, F., Estarellas, C., & Gervasio, F. L. (2022) · eLife · doi:10.7554/elife.81167 · Cited by 32
Desantis, J., Massari, S., Corona, A., Astolfi, A., Sabatini, S., Manfroni, G., Palazzotti, D., Cecchetti, V., Pannecouque, C., Tramontano, E., et al. (2020) · Molecules · doi:10.3390/molecules25051183 · Cited by 29
Single-Cell Transcriptomics To Define Plasmodium falciparum Stage Transition in the Mosquito Midgut
Mohammed, M., Dziedziech, A., Sekar, V., Ernest, M., Alves E Silva, T. L., Balan, B., Emami, S. N., Biryukova, I., Friedländer, M. R., Jex, A., et al. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.03671-22 · Cited by 25
Bostancioglu, S. M., & Mutlu, O. (2025) · Parasitology Research · doi:10.1007/s00436-024-08433-5 · Cited by 4
Metadata
- Authors
- Volkamer, A., Kuhn, D., Rippmann, F., & Rarey, M.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-05-23
- Volume
- 28
- Issue
- 15
- Pages
- 2074-2075
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2163816950
- Cited by
- 613
- References
- 0
- FWCI
- 13.58
- Type
- journal article
- Language
- en
- Open access
- bronze
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
