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Genomic diversity, lifestyles and evolutionary origins of DPANN archaea
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Archaea-a primary domain of life besides Bacteria-have for a long time been regarded as peculiar organisms that play marginal roles in biogeochemical cycles. However, this picture changed with the discovery of a large diversity of archaea in non-extreme environments enabled by the use of cultivation-independent methods. These approaches have allowed the reconstruction of genomes of uncultivated microorganisms and revealed that archaea are diverse and broadly distributed in the biosphere and seemingly include a large diversity of putative symbiotic organisms, most of which belong to the tentative archaeal superphylum referred to as DPANN. This archaeal group encompasses at least 10 different lineages and includes organisms with extremely small cell and genome sizes and limited metabolic capabilities. Therefore, many members of DPANN may be obligately dependent on symbiotic interactions with other organisms and may even include novel parasites. In this contribution, we review the current knowledge of the gene repertoires and lifestyles of members of this group and discuss their placement in the tree of life, which is the basis for our understanding of the deep microbial roots and the role of symbiosis in the evolution of life on Earth.
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“These artifacts are expected to particularly affect microbial lineages comprised predominantly of symbiotic members such as the CPR bacteria and DPANN archaea, as genomes of known symbionts are often compositionally biased and characterized by faster evolutionary rates (Dombrowski et al. 2019).”
From The Emergence of Life (2019) · cites this paper as Dombrowski et al. 2019
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“These absences are present across related lineages, suggesting a genuine loss, rather than metagenome-assembled genome incompleteness.”
From ATP synthase evolution on a cross-braced dated tree of life (2023) · cites this paper as [59]
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“This finding suggests that ATP synthases are not as essential as previously assumed32,33,45,65 with loss in DPANN and CPR lineages likely being the result of genome streamlining processes consistent with their predicted host-dependent lifestyles58,59.”
From ATP synthase evolution on a cross-braced dated tree of life (2023) · cites this paper as [59]
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Metadata
- Authors
- Dombrowski, N., Lee, J.-H., Williams, T. A., Offre, P., & Spang, A.
- Affiliations
- Utrecht University (NL)
- Uppsala University (SE)
- University of Bristol (GB)
- Corresponding author
- Spang, Anja
- Venue
- FEMS Microbiology Letters
- Publisher
- Oxford University Press (OUP)
- Published
- 2019-01-01
- Volume
- 366
- Issue
- 2
- ISSN
- 0378-1097 (ISSN-L)
- 1574-6968
- PMC
- PMC6349945
- OpenAlex
- W2910961041
- Cited by
- 230
- References
- 110
- Citations by year
- 2026: 20 · 2025: 25 · 2024: 34 · 2023: 30 · 2022: 43 · 2021: 39 · 2020: 28 · 2019: 11
- FWCI
- 2.19
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- FEMS Microbiology Letters (publishedVersion, cc-by)
- NIOZ Publications (Royal Netherlands Institute for Sea Research) (publishedVersion, other-oa)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Bristol Research (University of Bristol) (publishedVersion, cc-by)
- Flanders Marine Institute (Flanders Marine Institute) (submittedVersion, other-oa)
- KTH Publication Database DiVA (KTH Royal Institute of Technology) (submittedVersion, other-oa)
- Explore Bristol Research (submittedVersion, cc-by)
- Funders
- Swedish Research Council (2016-03559)
- Netherlands Organisation for Scientific Research
- Royal Society University Research
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
- Keywords
- DPANN archaea, genomic diversity, symbiosis, obligate symbionts, gene repertoire, tree of life, unculturable microorganisms
- MeSH terms
- Archaea, Phylogeny, Genetic Variation, Evolution, Molecular, Genome, Archaeal
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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