De novo assembly of the cattle reference genome with single-molecule sequencing

Cited by (857)

Items 201–300 of 857

1. A cattle graph genome incorporating global breed diversity
   Andrea Talenti, Jessica Powell, Johanneke Dinie Hemmink, Elizabeth A. J. Cook, David Wragg, Siddharth Jayaraman, Edith A. Paxton, Chukwunonso Ezeasor, Emmanuel Obishakin, Ebere Roseann Agusi et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
2. Ancient Genomes Illuminate the Origins and Dynamic History of East Asian Cattle
   Cai, Dawei, Kim, Donghee, Zhang, Naifan, Wang, Xingcheng, Li, Tianshu, Li, Jian, Li, Chang, Lian, Shengnan, Shao, Xinyue, Hu, Songmei et al. · 2025 · Science
3. Breeding Sustainable Beef Cows: Reducing Weight and Increasing Productivity
   W. M. Snelling, Richard Mark Thallman, Matthew L Spangler, L. A. Kuehn · 2022 · Animals
4. Genome-wide association study for stayability at different calvings in Nellore beef cattle
   Diogo Osmar Silva, Gerardo Alves Fernandes Júnior, Larissa Fernanda Simielli Fonseca, Lúcio Flávio Macêdo Mota, Tiago Bresolin, Roberto Carvalheiro, Lúcia Galvão de Albuquerque · 2024 · BMC Genomics
5. Transcriptional response to an alternative diet on liver, muscle, and rumen of beef cattle
   Anna Carolina Fernandes, Antônio Reverter, Kate A. Keogh, Pâmela A. Alexandre, Juliana Afonso, Júlio César Pascale Palhares, Tainã Figueiredo Cardoso, Jéssica Moraes Malheiros, Jennifer Jéssica Bruscadin, Priscila Silva Neubern de Oliveira et al. · 2024 · Scientific Reports
6. Genomic Reconstruction of the Successful Establishment of a Feralized Bovine Population on the Subantarctic Island of Amsterdam
   Mathieu Gautier, Thierry Micol, Louise Camus, Katayoun Moazami‐Goudarzi, Michel Navès, Élise Guéret, Stéfan Engelen, Arnaud Lemainque, François Colas, Laurence Flori et al. · 2024 · Molecular Biology and Evolution
7. Applying the algorithm for Proven and young in GWAS Reveals high polygenicity for key traits in Nellore cattle
   Adebisi R. Ogunbawo, Jorge Hidalgo, Henrique A. Mulim, Eula Regina Carrara, Henrique Torres Ventura, Nadson Oliveira de Souza, Daniela A. L. Lourenco, Hinayah Rojas de Oliveira · 2025 · Frontiers in Genetics
8. High-resolution transcriptomics of bovine purified protein derivative-stimulated peripheral blood from cattle infected with Mycobacterium bovis across an experimental time course
   Carolina N. Correia, Gillian P. McHugo, John Arthur Browne, Kirsten E. McLoughlin, Nicolas Nalpas, David A. Magee, Adam O. Whelan, Bernardo Villarreal‐Ramos, Hans Martin Vordermeier, Eamonn P. Gormley et al. · 2022 · Tuberculosis
9. Sharing of either phenotypes or genetic variants can increase the accuracy of genomic prediction of feed efficiency
   Sunduimijid Bolormaa, Iona M. MacLeod, Majid Khansefid, Leah C. Marett, W. J. Wales, F. Miglior, Christine F. Baes, Flávio Schramm Schenkel, Erin E. Connor, C.I.V. Manzanilla-Pech et al. · 2022 · Genetics Selection Evolution
10. Truncation of IFT80 causes early embryonic loss in Holstein cattle associated with Holstein haplotype 2
    Martha Sofia Ortega, Derek M. Bickhart, Kelsey N. Lockhart, D.J. Null, Jana L. Hutchison, Jennifer C. McClure, John B. Cole · 2022 · Journal of Dairy Science
11. Mutation of the MYH3 gene causes recessive cleft palate in Limousine cattle
    Anne Vaiman, Sébastien Fritz, Christian Beauvallet, Mekki Boussaha, Cécile Grohs, Nathalie Daniel-Carlier, Anne Relun, Didier Boichard, Jean-Luc Vilotte, Amandine Duchesne · 2022 · Genetics Selection Evolution
12. Single-step genome-wide association studies and post-GWAS analyses for the number of oocytes and embryos in Gir cattle
    Renata de Fátima Bretanha Rocha, Arielly Oliveira Garcia, Pamela Itajara Otto, Mateus Guimarães dos Santos, Marcos Vinícius Gualberto Barbosa da Silva, Marta Fonseca Martins, Marco Antônio Machado, J. C. do C. Panetto, Simone Eliza Facioni Guimarães · 2023 · Mammalian Genome
13. A Heterozygous Missense Variant in the COL5A2 in Holstein Cattle Resembling the Classical Ehlers–Danlos Syndrome
    Joana G. P. Jacinto, Irene M. Häfliger, Inês Berenguer Veiga, Anna Letko, Cinzia Benazzi, Marilena Bolcato, Cord Drögemüller · 2020 · Animals
14. The genomes of precision edited cloned calves show no evidence for off-target events or increased de novo mutagenesis
    Swati Jivanji, Chad Harland, Sally Cole, Brigid Brophy, Dorian J. Garrick, Russell G. Snell, Mathew D. Littlejohn, Götz Laible · 2021 · BMC Genomics
15. Estimation of the autosomal contribution to total additive genetic variability of carcass traits in Japanese Black cattle
    Shinichiro Ogawa, Hirokazu Matsuda, Yukio Taniguchi, Toshio Watanabe, Yoshikazu Sugimoto, Hiroaki Iwaisaki · 2022 · Animal Science Journal
16. Evaluating the Efficacy of Target Capture Sequencing for Genotyping in Cattle
    Yan Xin Ren, Mehar Singh Khatkar, Callum MacPhillamy, Haofei Wang, Rudi A. McEwin, Tong Chen, Wayne S. Pitchford, Wai Yee Low · 2024 · Genes
17. Genome-wide diversity and admixture of five indigenous cattle populations from the Tigray region of northern Ethiopia
    Tsadkan Zegeye, Gurja Belay, Adriana Vallejo‐Trujillo, Jianlin Han, Olivier Hanotte · 2023 · Frontiers in Genetics
18. Uncovering the architecture of selection in two Bos taurus cattle breeds
    Troy N. Rowan, Robert D. Schnabel, Jared E. Decker · 2024 · Evolutionary Applications
19. Genome-wide association studies and functional annotation of pre-weaning calf mortality and reproductive traits in Nellore cattle from experimental selection lines
    Gustavo Roberto Dias Rodrigues, Luiz F. Brito, Lúcio Flávio Macêdo Mota, Joslaine Noely dos Santos Gonçalves Cyrillo, Júlia P. S. Valente, Lorena Ferreira Benfica, João Barbosa da Silva Neto, Marcelo Sant’Ana Borges, Fábio Morato Monteiro, Lenira El Faro et al. · 2024 · BMC Genomics
20. Functional validation to explore the protective role of miR-223 in Staphylococcus aureus-induced bovine mastitis
    Xueqin Liu, Siyuan Mi, Gerile Dari, Siqian Chen, Jiuzhou Song, David Evan MacHugh, Ying Yu · 2025 · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology
21. Integrative genomics sheds light on the immunogenetics of tuberculosis in cattle
    John Francis O'Grady, Gillian P. McHugo, James A. Ward, Thomas Jonathan Hall, Sarah L Faherty O’Donnell, Carolina N. Correia, John A Browne, Michael McDonald, Eamonn P. Gormley, Valentina Riggio et al. · 2025 · Communications Biology
22. Identification of two new recessive MC1R alleles in red‐coloured Evolèner cattle and other breeds
    Miriam Hauser, Heidi Signer‐Hasler, Luzia Küttel, Aurélien Capitan, Bernt Guldbrandtsen, Dirk Hinrichs, Christine Flury, Franz R. Seefried, Cord Drögemüller · 2022 · Animal Genetics
23. Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle
    Wai Yee Low, Benjamin D. Rosen, Yan Xin Ren, Derek M. Bickhart, Thu‐Hien To, Fergal J. Martin, Konstantinos Billis, Tad Stewart Sonstegard, Shawn T Sullivan, Stefan Hiendleder et al. · 2022 · BMC Genomics
24. Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing Methods
    Yahui Gao, Li Ma, George E. Liu · 2022 · Genes
25. Multi-Tissue Transcriptome Study of Innate Immune Gene Expression Profiling Reveals Negative Energy Balance Altered the Defense and Promoted System Inflammation of Dairy Cows
    Lingli Dai, Zaixia Liu, Lili Guo, Yuan Chai, Yanda Yang, Yu Wang, Yanfen Ma, Caixia Shi, Wenguang Zhang · 2023 · Veterinary Sciences
26. Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies
    Yan Xin Ren, Elizabeth Tseng, Timothy P. L. Smith, Stefan Hiendleder, John Lewis Williams, Wai Yee Low · 2023 · BMC Genomics
27. Runs of homozygosity and signatures of selection for number of oocytes and embryos in the Gir Indicine cattle
    Renata de Fátima Bretanha Rocha, Arielly Oliveira Garcia, Pamela Itajara Otto, Marcos Vinícius Gualberto Barbosa da Silva, Marta Fonseca Martins, Marco Antônio Machado, J. C. do C. Panetto, Simone Eliza Facioni Guimarães · 2023 · Mammalian Genome
28. Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expression sequencing
    Mazdak Salavati, Richard C. Clark, Doreen Becker, Christa Kühn, Graham Stuart Plastow, Sébastien Dupont, Gabriel Costa Monteiro Moreira, Carole Charlier, Emily L. Clark · 2023 · G3 Genes Genomes Genetics
29. Genome-wide survey reveals the genetic background of Xinjiang Brown cattle in China
    Xiao Wang, Zhen Ma, Liang Gao, Lixin Yuan, Ye Zhibing, Fanrong Cui, Xiaoping Guo, Wujun Liu, Xiang-Min Yan · 2024 · Frontiers in Genetics
30. Genetic score omics regression and multitrait meta-analysis detect widespread cis -regulatory effects shaping bovine complex traits
    Ruidong Xiang, Lingzhao Fang, Shuli Liu, George E. Liu, Albert Tenesa, Yahui Gao, Brett Mason, Amanda Jane Chamberlain, Michael Edward Goddard, Shuli Liu et al. · 2025 · PNAS Nexus
31. Evolutionary Pattern of Interferon Alpha Genes in Bovidae and Genetic Diversity of IFNAA in the Bovine Genome
    Sunday Olusola PETERS, Tanveer Hussain, Adeyemi Sunday ADENAIKE, Jordan Hazzard, Olanrewaju B. Morenikeji, Marcos De Donato, Sujay Paul, Masroor Ellahi Babar, Abdulmojeed Yakubu, Ikhide G. Imumorin · 2020 · Frontiers in Immunology
32. Genome-wide association study for milk production traits in Dual-Purpose Belgian Blue cows
    Hadi Atashi, Hélène Wilmot, Sylvie Vanderick, Xavier Hubin, Nicolas Gengler · 2022 · Livestock Science
33. Genomic Reference Resource for African Cattle: Genome Sequences and High-Density Array Variants
    Abdulfatai Tijjani, Sumaya Kambal, Endashaw Terefe, Regina Njeru, Moses Ogugo, Gideon Ndambuki, Ayao Missohou, Amadou Traoré, Bashir Salim, Chukwunonso Ezeasor et al. · 2024 · Scientific Data
34. A Heterozygous Missense Variant in MAP2K2 in a Stillborn Romagnola Calf with Skeletal-Cardio-Enteric Dysplasia
    Joana G. P. Jacinto, Irene M. Häfliger, Arcangelo Gentile, Cord Drögemüller · 2021 · Animals
35. Genotype by Prenatal Environment Interaction for Postnatal Growth of Nelore Beef Cattle Raised under Tropical Grazing Conditions
    Mário Luiz Santana, Annaíza Braga Bignardi, Rodrigo Junqueira Pereira, Gerson A. Oliveira Júnior, Anielly de Paula Freitas, Roberto Carvalheiro, Joanir Pereira Eler, José Bento Sterman Ferraz, Joslaine Noely dos Santos Gonçalves Cyrillo, Maria Eugênia Zerlotti Mercadante · 2023 · Animals
36. Influence of Maternal Supplementation with Vitamins, Minerals, and (or) Protein/Energy on Placental Development and Angiogenic Factors in Beef Heifers during Pregnancy
    Bethania J Dávila Ruiz, Carl Robertson Dahlen, Kacie L McCarthy, Joel S S Caton, Jennifer L Hurlbert, Friederike Baumgaertner, Ana Clara B Menezes, Wellison J. S. Diniz, Sarah R R Underdahl, James D Kirsch et al. · 2024 · Veterinary Sciences
37. Identification and characterization of whole blood gene expression and splicing quantitative trait loci during early to mid-lactation of dairy cattle
    Yongjie Tang, Jinning Zhang, Wenlong Li, Xueqin Liu, Siqian Chen, Siyuan Mi, Jinyan Yang, Jinyan Teng, Lingzhao Fang, Ying Yu · 2024 · BMC Genomics
38. Relationship between the rumen microbiome and liver transcriptome in beef cattle divergent for feed efficiency
    Kate A. Keogh, David A. Kenny, Pâmela A. Alexandre, Sinéad M. Waters, Emily McGovern, Mark McGee, Antônio Reverter · 2024 · Animal Microbiome
39. Genetic parameters and genome-wide association analyses for lifetime productivity in Chinese Holstein cattle
    Hailiang Zhang, Ao Wang, Weiming Xiao, Siyuan Mi, Lirong Hu, Luiz F. Brito, Gang Guo, Qingxia Yan, Shaohu Chen, Yachun Wang · 2024 · Journal of Dairy Science
40. Evaluating Large Spontaneous Deletions in a Bovine Cell Line Selected for Bovine Viral Diarrhea Virus Resistance
    Aspen M. Workman, Michael P. Heaton, Dennis A. Webster, Gregory P. Harhay, Ted Kalbfleisch, Timothy P. L. Smith, Shollie M. Falkenberg, Daniel F. Carlson, Tad Stewart Sonstegard · 2021 · Viruses
41. Characterization of Accessible Chromatin Regions in Cattle Rumen Epithelial Tissue during Weaning
    Clarissa Boschiero, Yahui Gao, R.L. Baldwin, Li Ma, George E. Liu, Congjun Li · 2022 · Genes
42. Full‐length transcriptome sequencing reveals extreme incomplete annotation of the goat genome
    Huanhuan Zhang, Yilin Liang, Shaomei Chen, Zeyi Xuan, Yu Jiang, Ran Li, Yanhong Cao · 2023 · Animal Genetics
43. Estimation of inbreeding, between-breed genomic relatedness and definition of sub-populations in red-pied cattle breeds
    Hélène Wilmot, Tom Druet, Ina Hulsegge, Nicolas Gengler, M.P.L. Calus · 2023 · animal
44. The uterine secretory cycle: recurring physiology of endometrial outputs that setup the uterine luminal microenvironment
    Kasey M. Schalich, Prasanthi P. Koganti, Juan M. Castillo, Olivia M. Reiff, Soon Hon Cheong, Vimal Selvaraj · 2023 · Physiological Genomics
45. Transcriptomic analysis reveals diverse expression patterns underlying the fiber diameter of oxidative and glycolytic skeletal muscles in steers
    Wenxiang Wang, Tianliu Zhang, Lili Du, Keanning Li, Lupei Zhang, Haipeng Li, Xue Gao, Lingyang Xu, Junya Li, Huijiang Gao · 2023 · Meat Science
46. Detection and characterization of copy number variation in three differentially-selected Nellore cattle populations
    Lorena Ferreira Benfica, Luiz F. Brito, Ricardo Dutra do Bem, Letícia Fernanda de Oliveira, Henrique A. Mulim, Larissa Graciano Braga, Joslaine Noely dos Santos Gonçalves Cyrillo, Sarah Figueiredo Martins Bonilha, Maria Eugênia Zerlotti Mercadante · 2024 · Frontiers in Genetics
47. Single-step genome-wide association study uncovers known and novel candidate genomic regions for endocrine and classical fertility traits in Swedish Red and Holstein dairy cows
    Getinet Mekuriaw Tarekegn, Erling Strandberg, Sreten Andonov, Renée Båge, Patricia Ask-Gullstrand, Elisenda Rius-Vilarrasa, J.M. Christensen, B. Berglund · 2021 · Livestock Science
48. Delayed processing of blood samples impairs the accuracy of mRNA-based biomarkers
    Chace Wilson, Nicholas W Wege Dias, Stefania Pancini, Vitor R G Mercadante, Fernando H. Biase · 2022 · Scientific Reports
49. Machine Learning-Based Co-Expression Network Analysis Unravels Potential Fertility-Related Genes in Beef Cows
    Wellison J. S. Diniz, Priyanka Banerjee, Soren P P Rodning, Paul William Dyce · 2022 · Animals
50. Skim-Nanopore sequencing for routine genomic evaluation and bacterial pathogen detection in cattle
    Harrison J. Lamb, Loan T Nguyen, Tatiana E. Briody, Rebecca K. Ambrose, Ben J. Hayes, Timothy John Mahony, Elizabeth M. Ross · 2023 · Animal Production Science
51. A homozygous missense variant in laminin subunit beta 1 as candidate causal mutation of hemifacial microsomia in Romagnola cattle
    Joana G. P. Jacinto, Irene M. Häfliger, Marco Bernardini, Maria Teresa Mandara, Ezio Bianchi, Marilena Bolcato, Noemi Romagnoli, Arcangelo Gentile, Cord Drögemüller · 2021 · Journal of Veterinary Internal Medicine
52. Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
    M. Elise Lauterbur, Maria Izabel A. Cavassim, Ariella L. Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos, Jeffrey R. Adrion, Saurabh Belsare, Arjun Biddanda, Victoria R. Caudill et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
53. Exploring Cattle Structural Variation in the Era of Long Reads, Pangenome Graphs, and near-Complete Assemblies
    Liu, George E. · 2025 · Journal of Animal Science and Biotechnology
54. Integrative and comparative genomic analyses of mammalian macrophage responses to intracellular mycobacterial pathogens
    Thomas Jonathan Hall, Gillian P. McHugo, Michael P. Mullen, James A. Ward, Kate E. Killick, John Arthur Browne, Stephen Vincent Gordon, David Evan MacHugh · 2023 · Tuberculosis
55. Mapping restricted introgression across the genomes of admixed indigenous African cattle breeds
    Juliane Friedrich, Richard I. Bailey, Andrea Talenti, Umer Naveed Chaudhry, Qasim Ali, Emmanuel Obishakin, Chukwunonso Ezeasor, Jessica Powell, Olivier Hanotte, Abdulfatai Tijjani et al. · 2023 · Genetics Selection Evolution
56. Genetic legacy and adaptive signatures: investigating the history, diversity, and selection signatures in Rendena cattle resilient to eighteenth century rinderpest epidemics
    Elisa Somenzi, Erika Partel, Mario Barbato, Ana María Chero Osorio, Licia Colli, Niccolò Franceschi, Roberto Mantovani, Fabio Pilla, M. Komjanc, Alessandro Achilli et al. · 2024 · Genetics Selection Evolution
57. A recurrent de novo missense mutation in COL1A1 causes osteogenesis imperfecta type II and preterm delivery in Normande cattle
    Julien Corbeau, Cécile Grohs, Jeanlin Jourdain, Mekki Boussaha, F. Besnard, Anne Barbat, Vincent Plassard, Julie Rivière, Christophe Hamelin, Jeremy Raphael Mortier et al. · 2024 · Genetics Selection Evolution
58. A genome assembly and transcriptome atlas of the inbred Babraham pig to illuminate porcine immunogenetic variation
    John C. Schwartz, Colin P. Farrell, Graham Freimanis, Andrew Kelvin Sewell, John D. Phillips, John A. Hammond · 2024 · Immunogenetics
59. Insights into natural neocentromere evolution from a cattle T2T X chromosome
    Paulene S Pineda, Callum MacPhillamy, Yan Xin Ren, Tong Chen, Luan Zhong, David L. Adelson, Carey Dessaix, José G Pérez-Silva, Leanne S. Haggerty, Fergal J. Martin et al. · 2025 · Nature Communications
60. Marker selection and genomic prediction of economically important traits using imputed high-density genotypes for 5 breeds of dairy cattle
    Ahmed Al-Khudhair, Paul Michael VanRaden, D.J. Null, Bingjie Li · 2021 · Journal of Dairy Science
61. A De Novo Mutation in COL1A1 in a Holstein Calf with Osteogenesis Imperfecta Type II
    Joana G. P. Jacinto, Irene M. Häfliger, Fintan J. McEvoy, Cord Drögemüller, Jørgen Steen Agerholm · 2021 · Animals
62. Genetic parameters and genome-wide association study of digital cushion thickness in Holstein cows
    Matthew Barden, Bingjie Li, Bethany Eloise Griffiths, Alkiviadis Anagnostopoulos, Cherry Bedford, Androniki Psifidi, Georgios Banos, Georgios Oikonomou · 2022 · Journal of Dairy Science
63. Identification of candidate lethal haplotypes and genomic association with post-natal mortality and reproductive traits in Nellore cattle
    Patrícia Iana Schmidt, Lúcio Flávio Macêdo Mota, Larissa Fernanda Simielli Fonseca, Danielly Beraldo dos Santos Silva, Gabriela Bonfá Frezarim, Leonardo Machestropa Arikawa, Daniel Jordan de Abreu Santos, Ana Fabrícia Braga Magalhães, John B. Cole, Roberto Carvalheiro et al. · 2023 · Scientific Reports
64. Genome-wide association study identifies functional genomic variants associated with young stock survival in Nordic Red Dairy Cattle
    Zexi Cai, Xiaoping Wu, Bo Thomsen, Mogens Sandø Lund, Goutam Sahana · 2023 · Journal of Dairy Science
65. DNA methylation analysis to differentiate reference, breed, and parent-of-origin effects in the bovine pangenome era
    Callum MacPhillamy, Tong Chen, Stefan Hiendleder, John Lewis Williams, Hamid Alinejad‐Rokny, Wai Yee Low · 2024 · GigaScience
66. A pseudomolecule assembly of the Rocky Mountain elk genome
    Rick E. Masonbrink, David P. Alt, Darrell O. Bayles, Paola Mercedes Boggiatto, William H. Edwards, Fred M. Tatum, Jeffrey T. Williams, Jennifer H. Wilson‐Welder, Aleksey V. Zimin, Andrew Josef Severin et al. · 2021 · PLoS ONE
67. Transcriptional Reprogramming in Rumen Epithelium during the Developmental Transition of Pre-Ruminant to the Ruminant in Cattle
    R.L. Baldwin, Mei Liu, Erin E. Connor, T. G. Ramsay, George E. Liu, Congjun Li · 2021 · Animals
68. Inheritance of a mutation causing neuropathy with splayed forelimbs in Jersey cattle
    Ahmed Al-Khudhair, D.J. Null, John B. Cole, C.W. Wolfe, David J. Steffen, Paul Michael VanRaden · 2021 · Journal of Dairy Science
69. Frameshift Variant in Novel Adenosine-A1-Receptor Homolog Associated With Bovine Spastic Syndrome/Late-Onset Bovine Spastic Paresis in Holstein Sires
    Frederik Krull, Marc Hirschfeld, Wilhelm Wemheuer, Bertram Brenig · 2020 · Frontiers in Genetics
70. A chromosome-level genome assembly of the Korean crossbred pig Nanchukmacdon (Sus scrofa)
    Daehong Kwon, Nayoung Park, Suyeon Wy, Daehwan Lee, Han‐Ha Chai, In‐Cheol Cho, Jongin Lee, Kisang Kwon, Heesun Kim, Youngbeen Moon et al. · 2023 · Scientific Data
71. Genetic diversity and thermotolerance in Holstein cows: Pathway analysis and marker development using whole‐genome sequencing
    Maria Kalemkeridou, Ioannis Nanas, Katerina A. Moutou, Georgios S. Amiridis, Ανδρέας Τσιπουρλιάνος, Eleni Dovolou, Zissis Mamuris, Themistoklis Giannoulis · 2022 · Reproduction in Domestic Animals
72. Congenital syndromic Chiari-like malformation (CSCM) in Holstein cattle: towards unravelling of possible genetic causes
    Joana G. P. Jacinto, Anna Letko, Irene M. Häfliger, Cord Drögemüller, Jørgen Steen Agerholm · 2024 · Acta veterinaria Scandinavica
73. Genetic parameters, genome-wide association study, and selection perspective on gestation length in 16 French cattle breeds
    Jeanlin Jourdain, Aurélien Capitan, Romain Saintilan, Chris Hozé, Corentin Fouéré, Sébastien Fritz, Didier Boichard, Anne Barbat · 2024 · Journal of Dairy Science
74. β-Defensin gene copy number variation in cattle
    Ozge Sidekli, John W. Oketch, Seán Fair, Kieran G. Meade, Edward J. Hollox · 2024 · Royal Society Open Science
75. Whole-transcriptome analysis of BLV-infected cows reveals downregulation of immune response genes in high proviral loads cows
    Marcos Petersen, Guillermo A. Suarez Archilla, Marcos Mateo Miretti, Karina Gabriela Trono, Hugo Adrián Carignano · 2025 · Frontiers in Veterinary Science
76. Long read and preliminary pangenome analyses reveal breed-specific structural variations and novel sequences in Holstein and Jersey cattle
    Yahui Gao, Liu Yang, Kristen L. Kuhn, Wenli Li, G.I. Zanton, Mary Bowman, Pengju Zhao, Yang Zhou, Lingzhao Fang, John B. Cole et al. · 2025 · Journal of Advanced Research
77. Genome-wide association study and fine-mapping using imputed sequences to prioritize candidate genes for 30 complex traits in 50,309 Holstein bulls.
    Jun-Jian Wang, Yahui Gao, S. Toghiani, J. Cole, C. Maltecca, Li Ma, Ji-Cai Jiang · 2025 · Journal of Dairy Science
78. The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression
    Xi Wang, Casia Nursyifa, Sabhrina Gita Aninta, Genís Garcia‐Erill, Laura D. Bertola, Anubhab Khan, Josiah Kuja, Kristian Hanghøj, Jonas Meisner, Thomas Bøggild et al. · 2025 · Nature Communications
79. Assessing Bos taurus introgression in the UOA Bos indicus assembly
    Maulana M. Naji, Yuri Tani Utsunomiya, Johann Sölkner, Benjamin D. Rosen, Gábor Mészáros · 2021 · Genetics Selection Evolution
80. Exploring genome-wide differentiation and signatures of selection in Italian and North American Holstein populations
    Christian Persichilli, Gabriele Senczuk, Salvatore Mastrangelo, Maurizio Marusi, Jan-Thijs van Kaam, R. Finocchiaro, Marika Di Civita, Martino Cassandro, Fabio Pilla · 2023 · Journal of Dairy Science
81. Short heat shock has a long-term effect on mesenchymal stem cells’ transcriptome
    Ivana Ribarski-Chorev, Gisele Schudy, Carmit Strauss, Sharon Schlesinger · 2023 · iScience
82. AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes
    Deborah A. Triant, Amy T Walsh, Gabrielle A. Hartley, Bruna Petry, Morgan R Stegemiller, Benjamin M. Nelson, Makenna M. McKendrick, Emily P. Fuller, Noelle E. Cockett, James Eugene Koltes et al. · 2023 · Mammalian Genome
83. Detection and evaluation of parameters influencing the identification of heterozygous-enriched regions in Holstein cattle based on SNP chip or whole-genome sequence data
    Henrique A. Mulim, Victor Breno Pedrosa, Luís Fernando Batista Pinto, Francesco Tiezzi, Christian Maltecca, Flávio Schramm Schenkel, Luiz F. Brito · 2024 · BMC Genomics
84. Genome-Wide Analysis of Genetic Diversity and Selection Signatures in Zaobei Beef Cattle
    Liangyu Shi, Pu Zhang, Qing Liu, Chenhui Liu, Lei Cheng, Bo Yu, Hongbo Chen · 2024 · Animals
85. Genetic Parameter Estimates for Carcass and Meat Quality Traits and Their Genetic Associations With Sexual Precocity Indicator Traits in Nellore Cattle
    Leonardo Machestropa Arikawa, Lúcio Flávio Macêdo Mota, Patrícia Iana Schmidt, Bruna Maria Salatta, Sindy Liliana Caivio Nasner, João Barbosa da Silva Neto, Larissa Fernanda Simielli Fonseca, Ana Fabrícia Braga Magalhães, Delvan Alves da Silva, Roberto Carvalheiro et al. · 2025 · Journal of Animal Breeding and Genetics
86. Clinicopathological and Genomic Characterization of a Simmental Calf with Generalized Bovine Juvenile Angiomatosis
    Joana G. P. Jacinto, Irene M. Häfliger, Nicole Borel, Patrik Zanolari, Cord Drögemüller, Inês Berenguer Veiga · 2021 · Animals
87. Evaluation of RNA quality and functional transcriptome of beef longissimus thoracis over time post-mortem
    Stephanie Lam, Arun Kommadath, Ó. López-Campos, Nuria Prieto, Jennifer Lynn Aalhus, Manuel M Juarez, Michael E.R. Dugan, Payam Vahmani · 2021 · PLoS ONE
88. Effect of Temperature and Maternal Age on Recombination Rate in Cattle
    Botong Shen, Ellen Freebern, Jicai Jiang, Christian Maltecca, John B. Cole, George E. Liu, Li Ma · 2021 · Frontiers in Genetics
89. State of the art on the physical mapping of the Y-chromosome in the Bovidae and comparison with other species — A review
    Cristina Rossetti, V. Genualdo, D. Incarnato, Filomena Mottola, A. Perucatti, Alfredo Pauciullo · 2022 · Animal Bioscience
90. Extensive Variation in Gene Expression is Revealed in 13 Fertility-Related Genes Using RNA-Seq, ISO-Seq, and CAGE-Seq From Brahman Cattle
    Elizabeth M. Ross, Hari Sanjana, Loan T Nguyen, Yuanyuan Cheng, S. S. Moore, Ben J. Hayes · 2022 · Frontiers in Genetics
91. Development of an Improved in vitro Model of Bovine Trophectoderm Differentiation
    Martha Sofia Ortega, Jason A. Rizo, Jéssica Nora Drum, Eleanore V. O’Neil, Ky Garrett Pohler, Karl C. Kerns, Amanda Schmelze, Jonathan A. Green, Thomas E. Spencer · 2022 · Frontiers in Animal Science
92. Butyrate Induces Modifications of the CTCF-Binding Landscape in Cattle Cells
    Clarissa Boschiero, Yahui Gao, R.L. Baldwin, Li Ma, Congjun Li, George E. Liu · 2022 · Biomolecules
93. Quantitative trait loci exploration and characterization of gestation length in Holstein cattle
    Maria Agustina Raschia, Daniel Omar Maizon, Ariel Amadío, Juan Pablo Nani, M. A. Poli · 2023 · Theriogenology
94. Molecular Dissection of the Antibody Response: Opportunities and Needs for Application in Cattle
    Rubén Barroso, W. Ivan Morrison, Liam J. Morrison · 2020 · Frontiers in Immunology
95. Sperm morphometry is affected by increased inbreeding in the Retinta cattle breed: A molecular approach
    E. Terán, Florencia Azcona, Manuel Ramón, Antonio Molina, J. Dorado, Manuel Hidalgo, Pablo J. Ross, Daniel Estanislao Goszczynski, Sebastián Demyda-Peyrás · 2021 · Molecular Reproduction and Development
96. Characterization of tRNA expression profiles in large offspring syndrome
    Anna K. Goldkamp, Yahan Li, Rocío Melissa Rivera, Darren E. Hagen · 2022 · BMC Genomics
97. Graph construction method impacts variation representation and analyses in a bovine super-pangenome
    Alexander S. Leonard, Danang Crysnanto, Xena Marie Mapel, Meenu Bhati, Hubert Pausch · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
98. Taurine and Indicine Haplotype Representation in Advanced Generation Individuals From Three American Breeds
    Crum, Tamar E., Schnabel, Robert D., Decker, Jared E., Taylor, Jeremy F. · 2021 · Frontiers in Genetics
99. A large structural variant collection in Holstein cattle and associated database for variant discovery, characterization, and application
    Jason R. Grant, Emily K. Herman, Lael D. Barlow, F. Miglior, Flávio Schramm Schenkel, Christine F. Baes, Paul Stothard · 2024 · BMC Genomics
100. Cathelicidin antimicrobial peptides mediate immune protection in marsupial neonates
     Jongbeom Park, Wenfan Ke, Aellah M. Kaage, Charles Yakov Feigin, Aaron H. Griffing, Yuri Pritykin, Mohamed S. Donia, Ricardo Mallarino · 2025 · Science Advances