De novo assembly of the cattle reference genome with single-molecule sequencing

Cited by (857)

Items 301–400 of 857

1. Functional impact of splicing variants in the elaboration of complex traits in cattle
   Mathieu Charles, Nicolas Gaïani, Marie-Pierre Sanchez, Mekki Boussaha, Chris Hozé, Didier Boichard, Dominique Rocha, Arnaud Boulling · 2025 · Nature Communications
2. Genome-wide association study for feed efficiency indicator traits in Nellore cattle considering genotype-by-environment interactions
   João Barbosa da Silva Neto, Luiz F. Brito, Lúcio Flávio Macêdo Mota, C. de U. Magnabosco, Fernando Sebastian Baldi · 2025 · Frontiers in Genetics
3. Genetic Parameters of Resilience Indicators Across Growth in Beef Heifers and Their Associations With Weight, Reproduction, Calf Performance and Pre‐Weaning Survival
   Gustavo Roberto Dias Rodrigues, Júlia P. S. Valente, Vanessa Theodoro Rezende, Leonardo Araújo, João Barbosa da Silva Neto, Lúcio Flávio Macêdo Mota, Mário Luiz Santana, Roberta Carrilho Canesin, Sarah Figueiredo Martins Bonilha, Lúcia Galvão de Albuquerque et al. · 2025 · Journal of Animal Breeding and Genetics
4. Application of a French cattle pangenome, from structural variant discovery to association studies on key phenotypes
   Valentin Sorin, Maulana M. Naji, Clément Birbes, Cécile Grohs, Clémentine Escouflaire, Sébastien Fritz, Camille Eché, Camille Marcuzzo, Amandine Suin, Cécile Donnadieu et al. · 2025 · Genetics Selection Evolution
5. Reference-Guided Draft Genome Assembly, Annotation and SSR Mining Data of the Peruvian Creole Cattle (Bos taurus)
   Richard Estrada, Flor-Anita Corredor, Deyanira Figueroa, Wilian Salazar, Carlos Quilcate, Héctor V. Vásquez, Jorge L. Maicelo, Jhony Gonzales, Carlos I. Arbizu · 2022 · Data
6. Heritability and variance component estimation for feed and water intake behaviors of feedlot cattle
   Elizabeth Dressler, Will Shaffer, Kelsey Bruno, Clint R. Krehbiel, Michelle S. Calvo-Lorenzo, Chris Richards, Sara E Place, Udaya DeSilva, L. A. Kuehn, Robert L Weaber et al. · 2023 · Journal of Animal Science
7. Single-step genome-wide association analyses for milk urea concentration in Walloon Holstein cows
   Hadi Atashi, Yansen Chen, Sylvie Vanderick, Xavier Hubin, Nicolas Gengler · 2023 · Journal of Dairy Science
8. Imputation strategies for genomic prediction using nanopore sequencing
   Harrison J. Lamb, Loan T Nguyen, James P. Copley, Bailey N. Engle, Ben J. Hayes, Elizabeth M. Ross · 2023 · BMC Biology
9. Assessing the feasibility, safety, and nutritional quality of using wild-caught pest flies in animal feed
   Kortnee Van Nest, Sabrina E. Swistek, Morgan Olmstead, Alina De La Mota‐Peynado, Robert D Ewing, Daniel Brabec, Dana Mitzel, Brenda Oppert, Lee W. Cohnstaedt, Phillip T. Shults · 2024 · Journal of Economic Entomology
10. A 6.7 kb deletion in the COL2A1 gene in a Holstein calf with achondrogenesis type II and perosomus elumbis
    Joana G. P. Jacinto, Irene M. Häfliger, Arcangelo Gentile, Cord Drögemüller, Marilena Bolcato · 2020 · Animal Genetics
11. Evaluation of updated Feed Saved breeding values developed in Australian Holstein dairy cattle
    Sunduimijid Bolormaa, Iona M. MacLeod, Majid Khansefid, Leah C. Marett, W. J. Wales, G.J. Nieuwhof, Christine F. Baes, Flávio Schramm Schenkel, Michael Edward Goddard, J.E. Pryce · 2022 · JDS Communications
12. Seven Shades of Grey: A Follow-Up Study on the Molecular Basis of Coat Colour in Indicine Grey Cattle Using Genome-Wide SNP Data
    Gabriele Senczuk, Vincenzo Landi, Salvatore Mastrangelo, Christian Persichilli, Fabio Pilla, Elena Ciani · 2022 · Genes
13. Genome-wide association study reveals that the IBSP locus affects ear size in cattle
    Jiafei Shen, Xiaoting Xia, Luyang Sun, Xiaohui Ma, Bizhi Huang, Quratulain Hanif, Ningbo Chen, Kaixing Qu, Jicai Zhang, Hong Chen et al. · 2023 · Heredity
14. Long-read Pore-C shows the 3D structure of the cattle genome
    Loan T Nguyen, Hyungtaek Jung, Jun Ma, Stacey B. Andersen, Elizabeth M. Ross · 2023 · Animal Production Science
15. Genetic Distinctness and Diversity of American Aberdeen Cattle Compared to Common Beef Breeds in the United States
    Nayan Bhowmik, Travis Seaborn, Kris A Ringwall, Carl Robertson Dahlen, Kendall Carl Swanson, Lauren L Hulsman Hanna · 2023 · Genes
16. Unmapped short reads from whole-genome sequencing indicate potential infectious pathogens in German Black Pied cattle
    Guilherme B. Neumann, Paula Korkuć, Monika Reißmann, Manuel J. Wolf, Katharina May, Sven König, Gudrun A. Brockmann · 2023 · Veterinary Research
17. Continent-wide genomic analysis of the African buffalo (Syncerus caffer)
    Andrea Talenti, Toby Wilkinson, Elizabeth A. J. Cook, Johanneke Dinie Hemmink, Edith A. Paxton, Matthew Mutinda Munyao, Stephen Ngulu, Siddharth Jayaraman, Richard P. Bishop, Isaiah Obara et al. · 2024 · Communications Biology
18. Integrated analysis of whole genome and transcriptome sequencing reveals a frameshift mutation associated with recessive embryonic lethality in Holstein cattle
    Yinqing Yang, Jingfang Si, X. Lv, Dongmei Dai, Lei Liu, S. Tang, Y. Wang, Suyang Zhang, Wei Xiao, Ying Zhang · 2021 · Animal Genetics
19. Pleiotropic Loci Associated With Foot Disorders and Common Periparturient Diseases in Holstein Cattle
    Ellen Lai, Alexa L. Danner, Thomas R. Famula, Anita M. Oberbauer · 2021 · Frontiers in Genetics
20. Identifying genetic variants and pathways influencing daughter averages for twinning in North American Holstein cattle and evaluating the potential for genomic selection
    Beth M. Lett, Brian W Kirkpatrick · 2022 · Journal of Dairy Science
21. Investigation of rumen long noncoding RNA before and after weaning in cattle
    Alexis Marceau, Yahui Gao, R.L. Baldwin, Congjun Li, Jicai Jiang, George E. Liu, Li Ma · 2022 · BMC Genomics
22. Genetic parameters of sole lesion recovery in Holstein cows
    Matthew Barden, Alkiviadis Anagnostopoulos, Bethany Eloise Griffiths, Bingjie Li, Cherry Bedford, Chris Watson, Androniki Psifidi, Georgios Banos, Georgios Oikonomou · 2023 · Journal of Dairy Science
23. Truncation of IFT80 causes early embryonic loss in cattle
    Martha Sofia Ortega, Derek M. Bickhart, Kelsey N. Lockhart, D.J. Null, Jana L. Hutchison, Jennifer C. McClure, John B. Cole · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
24. The genome of tropically adapted Brahman cattle ( Bos taurus indicus ) reveals novel genome variation in production animals
    Elizabeth M. Ross, Loan T Nguyen, Harrison J. Lamb, S. S. Moore, Ben J. Hayes · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
25. A Pilot Detection and Associate Study of Gene Presence-Absence Variation in Holstein Cattle
    Boschiero, Clarissa, Neupane, Mahesh, Yang, Liu, Schroeder, Steven G., Tuo, Wenbin, Ma, Li, Baldwin, Ransom L., Van Tassell, Curtis P., Liu, George E. · 2024 · Animals
26. Genomic Structure and Selection History across Angus Populations Worldwide: Insights from ROH, Selection Mapping, and Functional Analyses
    Mulim, Henrique A., Campos, Gabriel S., Cardoso, Fernando F., Pedrosa, Victor Breno, Latimer, Kajal, Upperman, Lindsay R., Knowles, A. J., Garcia, Andre, Retallick, Kelli, Miller, Steve et al. · 2026 · Mammalian Genome
27. Constructing a Draft Indian Cattle Pangenome Using Short-Read Sequencing
    Azam, Sarwar, Sahu, Abhisek, Pandey, Naveen Kumar, Neupane, Mahesh, Van Tassell, Curtis P., Rosen, Benjamin D., Gandham, Ravi Kumar, Rath, Subha Narayan, Majumdar, Subeer S. · 2025 · Communications Biology
28. Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
    Azam, Sarwar, Sahu, Abhisek, Pandey, Naveen Kumar, Neupane, Mahesh, Van Tassell, Curtis P, Rosen, Benjamin D, Gandham, Ravi Kumar, Rath, Subha Narayan, Majumdar, Subeer S · 2025 · Journal of Animal Science and Biotechnology
29. A high-resolution bovine mitochondrial co-expression network
    Pâmela A. Alexandre, Kate A. Keogh, Antônio Reverter, Nicholas James Hudson · 2025 · Biology Open
30. Single-Nucleus RNA Sequencing and Spatial Transcriptomics Reveal Cellular Heterogeneity and Intercellular Communication Networks in the Hypothalamus–Pituitary–Ovarian Axis of Pregnant Mongolian Cattle
    Yanchun Bao, Fengying Ma, Chenxi Huo, Hongxia Jia, Yunhan Li, Xiaoyi Yang, Jiajing Liu, Pengbo Gu, Caixia Shi, Mingjuan Gu et al. · 2025 · Animals
31. Comprehensive Multi-omics Analysis of Regulatory Variants for Body Weight in Cattle
    Qunhao Niu, Jiayuan Wu, Tianyi Wu, Tianliu Zhang, Tianzhen Wang, Xu Zheng, Zhida Zhao, Ling Xu, Zezhao Wang, Bo Zhu et al. · 2025 · Genomics Proteomics & Bioinformatics
32. Modeling genotype-by-environment interactions across climatic conditions reveals environment-specific genomic regions and candidate genes underlying feed efficiency traits in tropical beef cattle
    João B. Silva Neto, Luiz F. Brito, Lucio F. M. Mota, Gustavo R. D. Rodrigues, Fernando Baldi · 2026 · Scientific Reports
33. Re-Evaluation of Genotyping Methodologies in Cattle: The Proficiency of Imputation
    Moran Gershoni, Andrey Shirak, Yehoshav Ariel Ben-Meir, Ariel Shabtay, Miri Cohen-Zinder, Eyal Seroussi · 2023 · Genes
34. Using expression data to fine map QTL associated with fertility in dairy cattle
    Irene van den Berg, Amanda Jane Chamberlain, Iona M. MacLeod, Tuan Viet Nguyen, Michael Edward Goddard, Ruidong Xiang, Brett Mason, S. Meier, Claire V. C. Phyn, C.R. Burke et al. · 2024 · Genetics Selection Evolution
35. Phenotypic traits related to methane emissions from Holstein dairy cows challenged by low or high forage proportion
    Maria Holst Kjeldsen, Trinidad de Evan, Samantha Joan Noel, Anna A. Schönherz, Anne Louise Frydendahl Hellwing, Peter Lund, Martin Riis Weisbjerg · 2024 · Journal of Dairy Science
36. Genetic parameters of functional longevity and associated traits in Italian Charolais and Limousine breeds
    Simone Callegaro, Francesco Tiezzi, Christian Maltecca, Maria Chiara Fabbri, Riccardo Bozzi · 2024 · Journal of Animal Science
37. Unraveling the microbial diversity of bovine liver abscesses: isolation, identification, and genomic characterization of the Bacteroides found in hepatic lesions
    Robert J. Gruninger, Michael McCormack, Nora Chomistek, Rahat Zaheer, Tim Angus McAllister · 2025 · Microbiology Spectrum
38. Investigating the accuracy of imputing autosomal variants in Nellore cattle using the ARS-UCD1.2 assembly of the bovine genome
    Ísis da Costa Hermisdorff, Raphael Bermal Costa, Lúcia Galvão de Albuquerque, Hubert Pausch, Naveen Kumar Kadri · 2020 · BMC Genomics
39. Integrin alpha 6 homozygous splice-site mutation causes a new form of junctional epidermolysis bullosa in Charolais cattle
    Mekki Boussaha, Arnaud Boulling, Valérie Wolgust, Lorraine Bourgeois‐Brunel, Pauline Michot, Cécile Grohs, Nicolas Gaïani, Pierre-Yves Grivaud, Hélène Leclerc, Coralie Danchin-Burge et al. · 2023 · Genetics Selection Evolution
40. Increased heterozygosity in low‐pass sequencing data allows identification of blood chimeras in cattle
    Dorothea Lindtke, Franz R. Seefried, Cord Drögemüller, Markus Neuditschko · 2023 · Animal Genetics
41. Meta-analysis of heritability estimates and genome-wide association for tick-borne haemoparasites in African cattle
    Valentina Riggio, Maxime Madder, Michel Labuschagné, Rebecca Callaby, Rongrong Zhao, Appolinaire Djikeng, Josephus Fourie, James G. D. Prendergast, Liam J. Morrison · 2023 · Frontiers in Genetics
42. Single-step genome-wide association analyses for selected infrared-predicted cheese-making traits in Walloon Holstein cows
    Hadi Atashi, Yansen Chen, Hélène Wilmot, Catherine Bastin, Sylvie Vanderick, Xavier Hubin, Nicolas Gengler · 2023 · Journal of Dairy Science
43. Allele-specific binding variants causing ChIP-seq peak height of histone modification are not enriched in expression QTL annotations
    Seyed Mohammad Ghoreishifar, Amanda Jane Chamberlain, Ruidong Xiang, Claire Prowse-Wilkins, Thomas Lopdell, Mathew D. Littlejohn, J.E. Pryce, Michael Edward Goddard · 2024 · Genetics Selection Evolution
44. Estimation of genetic parameters and genome-wide association study for enzootic bovine leukosis resistance in Canadian Holstein cattle
    Renee Bongers, Christina Marie Rochus, Kerry Houlahan, Colin Lynch, Gerson A. Oliveira Júnior, Hinayah Rojas de Oliveira, Nienke van Staaveren, D.F. Kelton, F. Miglior, Flávio Schramm Schenkel et al. · 2024 · Journal of Dairy Science
45. Assessment of genome complementarity in three beef-on-dairy crossbreds reveals sire-specific effects on production traits with comparable rates of genomic inbreeding reduction
    Dorothea Lindtke, Sylvain Lerch, I. Morel, Markus Neuditschko · 2024 · BMC Genomics
46. Genomic Sequencing: Techniques, Advancements, and the Path Ahead
    Mohsina F. Patwekar, Faheem Patwekar, A. Venkata Badarinath, Abdul Ajeed Mohathasim Billah, Vamseekrishna Gorijavolu, Karthickeyan Krishnan, Palani Shanmugasundaram, P. Dharani Prasad, A. A. Kazi · 2025 · Journal of Bio-X Research
47. Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome
    Deborah A. Triant, J. J. Le Tourneau, Colin M. Diesh, Deepak Raveendran Unni, Md Shamimuzzaman, Amy T Walsh, Jack M. Gardiner, Anna K. Goldkamp, Yahan Li, Hung N. Nguyen et al. · 2020 · Animal Genetics
48. A de novo mutation in KRT5 in a crossbred calf with epidermolysis bullosa simplex
    Joana G. P. Jacinto, Irene M. Häfliger, Inês Berenguer Veiga, Cord Drögemüller, Jørgen Steen Agerholm · 2020 · Journal of Veterinary Internal Medicine
49. The Contribution of Copy Number Variants and Single Nucleotide Polymorphisms to the Additive Genetic Variance of Carcass Traits in Cattle
    Pierce Rafter, Isobel Claire Gormley, Andrew C. Parnell, Saeid Naderi, Donagh Pearse Berry · 2021 · Frontiers in Genetics
50. Using mid-infrared spectroscopy to increase GWAS power to detect QTL associated with blood urea nitrogen
    Irene van den Berg, Phuong N. Ho, Tuan Viet Nguyen, M. Haile‐Mariam, Timothy D. W. Luke, J.E. Pryce · 2022 · Genetics Selection Evolution
51. The Dynamics of Chromatin Accessibility Prompted by Butyrate-Induced Chromatin Modification in Bovine Cells
    Clarissa Boschiero, Yahui Gao, Mei Liu, R.L. Baldwin, Li Ma, Congjun Li, George E. Liu · 2022 · Ruminants
52. Disruption of CSF2RA in the bovine preimplantation embryo reduces development and affects embryonic gene expression in utero
    Froylan Sosa, Kyungjun Uh, Jéssica Nora Drum, Katy S Stoecklein, Kimberly M Davenport, Martha Sofia Ortega, Kiho Lee, Peter James Hansen · 2023 · Reproduction and Fertility
53. The single-cell transcriptome and chromatin accessibility datasets of peripheral blood mononuclear cells in Chinese holstein cattle
    Xiao Qin Wang, Yahui Gao, Congjun Li, Lingzhao Fang, George E. Liu, Xiuxin Zhao, Yuanpei Zhang, Gaozhan Cai, Guanghui Xue, Yan Liu et al. · 2023 · BMC Genomic Data
54. Allele specific binding of histone modifications and a transcription factor does not predict allele specific expression in correlated ChIP-seq peak-exon pairs
    Claire Prowse-Wilkins, Jianghui Wang, Josie B. Garner, Michael Edward Goddard, Amanda Jane Chamberlain · 2023 · Scientific Reports
55. An across breed, diet and tissue analysis reveals the transcription factor NR1H3 as a key mediator of residual feed intake in beef cattle
    Kate A. Keogh, David Anthony Kenny, Pâmela A. Alexandre, M. McGee, Antônio Reverter · 2024 · BMC Genomics
56. ExAgBov: A public database of annotated variations from hundreds of bovine whole-exome sequencing samples
    Rotem Raz, Zvi Roth, Moran Gershoni · 2022 · Scientific Data
57. Whole genome sequences of 70 indigenous Ethiopian cattle
    Wondossen Ayalew, Xiaoyun Wu, Getinet Mekuriaw Tarekegn, Rakan Naboulsi, Tesfaye Sisay Tessema, Renaud Van Damme, Erik Bongcam‐Rudloff, Min Chu, Chunnian Liang, Zewdu Edea et al. · 2024 · Scientific Data
58. Accurate, comprehensive gene annotation and ortholog identification across thousands of vertebrate genomes with TOGA2
    Malovichko, Yury V., Bein, Bernhard, Gonzales-Irribarren, Alejandro, Leushkin, Evgeny, Hilgers, Leon, Stephen, Amy, Yi, Xueling, Albertini, Michele, Stadager, Tim, Zumpt, Markus et al. · 2026
59. Dynamic regulation of spermatogenesis and hybrid sterility revealed by single-cell analysis in yak and cattle
    Shixin Wu, Guo-Wen Wang, Rui-Dong Wan, Rong‐Ge Yan, Xue Gao, Ruina Zhang, Qi-Lin Yang, You-Gui Fang, Gongxue Jia, Qi‐En Yang · 2026 · Molecular Biology and Evolution
60. Untargeted metabolomics and metagenomics reveal signatures for intramammary ceftiofur treatment and lactation stage in the cattle hindgut
    Karla A. Vasco, Zoe A. Hansen, Anthony L. Schilmiller, Bailey Bowcutt, Samantha L. Carbonell, P.L. Ruegg, Robert A. Quinn, Lixin Zhang, Shannon D. Manning · 2024 · Frontiers in Molecular Biosciences
61. Comparative Analysis of Genomic Prediction for Production Traits Using Genomic Annotation and a Genome-Wide Association Study at Sequencing Levels in Beef Cattle
    Zhida Zhao, Qunhao Niu, Tianyi Wu, Feng Liu, Zezhao Wang, Huijiang Gao, Junya Li, Bo Zhu, Lingyang Xu · 2024 · Agriculture
62. Detecting and characterizing copy number variation in a large commercial U.S. Holstein cattle population
    Giovanni Coelho Ladeira, Pablo J Pinedo, José E.P. Santos, William Watters Thatcher, Fernanda Marcondes de Rezende · 2025 · BMC Genomics
63. Genome-wide association analyses identify single nucleotide polymorphisms associated with in vitro embryo cleavage and blastocyst rates in Holstein bulls
    Kimberly M Davenport, Kelsey Lockhart, Katy S Stoecklein, Robert D. Schnabel, Thomas E. Spencer, Martha Sofia Ortega · 2025 · Journal of Dairy Science
64. Short communication: investigation of the feasibility of genomic selection in Icelandic Cattle
    Egill Gautason, Goutam Sahana, Guosheng Su, Baldur Helgi Benjamínsson, G. Jóhannesson, Bernt Guldbrandtsen · 2021 · Journal of Animal Science
65. High male specific contribution of the X-chromosome to individual global recombination rate in dairy cattle
    Naveen Kumar Kadri, J. Zhang, Claire Oget, Y. Wang, Christine Couldrey, Richard J. Spelman, Carole Charlier, Michel Georges, Tom Druet · 2022 · BMC Genomics
66. A de novo start‐lost variant in ANKRD28 in a Holstein calf with dwarfism
    Joana G. P. Jacinto, Irene M. Häfliger, Christine F. Baes, Hinayah Rojas de Oliveira, Cord Drögemüller · 2022 · Animal Genetics
67. EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle
    Tainã Figueiredo Cardoso, Jennifer Jéssica Bruscadin, Juliana Afonso, Juliana Petrini, Bruno Gabriel Nascimento Andrade, Priscila Silva Neubern de Oliveira, Jéssica Moraes Malheiros, M. I. P. Rocha, Adhemar Zerlotini, José Bento Sterman Ferraz et al. · 2022 · Mammalian Genome
68. Identification of candidate novel production variants on the Bos taurus chromosome X
    H. Trebes, Y. Wang, Edwardo Reynolds, Kathryn Tiplady, Chad Harland, Thomas Lopdell, Thomas Johnson, Stephen R. Davis, B.L. Harris, Richard J. Spelman et al. · 2023 · Journal of Dairy Science
69. Advanced Skeletal Ossification Is Associated with Genetic Variants in Chronologically Young Beef Heifers
    Katie A Shira, Brenda M. Murdoch, Kimberly M Davenport, Gabrielle M. Becker, Shuang Xie, Antonetta M. Colacchio, Phillip D. Bass, Michael J. Colle, Gordon K. Murdoch · 2023 · Genes
70. Assessment of genetic diversity, inbreeding, and collection completeness of Jersey bulls in the US National Animal Germplasm Program
    Krishnamoorthy Srikanth, M.A. Jaafar, Mahesh Neupane, Hafedh Ben Zaabza, Stephanie McKay, C.W. Wolfe, J. S. Metzger, Heather Jay Huson, Curtis P. Van Tassell, Harvey D. Blackburn · 2024 · Journal of Dairy Science
71. Effect of genomic regions harboring putative lethal haplotypes on reproductive performance in closed experimental selection lines of Nellore cattle
    Gustavo Roberto Dias Rodrigues, Joslaine Noely dos Santos Gonçalves Cyrillo, Lúcio Flávio Macêdo Mota, Patrícia Iana Schmidt, Júlia P. S. Valente, Eduarda S. Oliveira, Lúcia Galvão de Albuquerque, Luiz F. Brito, Maria Eugênia Zerlotti Mercadante · 2025 · Scientific Reports
72. Selection signatures detection in Nelore, Gir, and Red Sindhi cattle breeds
    Maria Victória Henrique Genuíno, Ayrton Fernandes de Oliveira Bessa, Roney Teixeira da Silva, Giovanna Maria dos Santos Câmara, J. C. do C. Panetto, Marco Antônio Machado, Sabrina Luzia Caetano, Salvador Boccaletti Ramos, Danísio Prado Munari, Tad Stewart Sonstegard et al. · 2025 · Mammalian Genome
73. A missense mutation in the FZD7 gene is associated with dilution of the red areas of the coat in Montbéliarde cattle
    Sandrine Floriot, Amandine Duchesne, Cécile Grohs, Chris Hozé, Marie-Christine Deloche, Guillaume Fayolle, Jean-Luc Vilotte, Didier Boichard, Sébastien Fritz, Mekki Boussaha · 2021 · Animal Genetics
74. Phylogenetic relationships of Argentinean Creole with other Latin American Creole Cattle as revealed by a medium density SNP microarray
    Maria Agustina Raschia, Mario Poli · 2021 · Archivos Latinoamericanos de Producción Animal
75. The impact of reference composition and genome build on the accuracy of genotype imputation in Australian Angus cattle
    Hassan Aliloo, Sam Clark · 2021 · Animal Production Science
76. Evidence of rare misassemblies in the bovine reference genome revealed by population genetic metrics
    Saber Qanbari, Robert D. Schnabel, Dörte Wittenburg · 2022 · Animal Genetics
77. A germline de novo variant in NUMB associated with a double‐outlet right ventricle in Chianina cattle
    Joana G. P. Jacinto, Irene M. Häfliger, Domenico Caivano, Cord Drögemüller · 2022 · Animal Genetics
78. Allele-biased expression of the bovine APOB gene associated with the cholesterol deficiency defect suggests cis-regulatory enhancer effects of the LTR retrotransposon insertion
    Doreen Becker, Rosemarie Weikard, A. Heimes, Frieder Hadlich, Harald Michael Hammon, M. Meyerholz, Wolfram Petzl, Holm Zerbe, Hans‐Joachim Schuberth, Martina Hoedemaker et al. · 2022 · Scientific Reports
79. Favored single nucleotide variants identified using whole genome Re-sequencing of Austrian and Chinese cattle breeds
    Maulana M. Naji, Yifan Jiang, Yuri Tani Utsunomiya, Benjamin D. Rosen, Johann Sölkner, Chuduan Wang, Li Jiang, Qin Zhang, Yi Zhang, Xiangdong Ding et al. · 2022 · Frontiers in Genetics
80. Allele-specific expression reveals functional SNPs affecting muscle-related genes in bovine.
    J. Bruscadin, T. F. Cardoso, W. J. da Silva Diniz, J. Afonso, M. M. de Souza, J. Petrini, Bruno Gabriel de Andrade, V. D. da Silva, J. B. Ferraz, A. Zerlotini et al. · 2022 · Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
81. Genetic and Genomic Analysis of Cow Mortality in the Israeli Holstein Population
    Joel Ira Weller, E. Ezra, Eyal Seroussi, Moran Gershoni · 2023 · Genes
82. lncRNA-gene network analysis reveals the effects of early maternal nutrition on mineral homeostasis and energy metabolism in the fetal liver transcriptome of beef heifers
    Muhammad Anas, Alison K K Ward, Kacie L McCarthy, Pawel P P Borowicz, Lawrence P. Reynolds, Joel S S Caton, Carl Robertson Dahlen, Wellison J. S. Diniz · 2024 · The Journal of Nutritional Biochemistry
83. Development of polymorphic markers in the immune gene complex loci of cattle
    Kiranmayee Bakshy, Dorothea Heimeier, J.C. Schwartz, Elizabeth Janet Glass, Samantha Wilkinson, Robin Alfred Skuce, Adrian R. Allen, Juliana Young, Jennifer C. McClure, John B. Cole et al. · 2021 · Journal of Dairy Science
84. Cattle Maternal Diversity Inferred From 1,883 Taurine And Indicine Mitogenomes
    Jigme Dorji, Christy Vander Jagt, Amanda Jane Chamberlain, Benjamin G. Cocks, Iona M. MacLeod, Hans D. Daetwyler · 2021 · Research Square
85. Beckwith-Wiedemann syndrome and large offspring syndrome involve alterations in methylome, transcriptome, and chromatin configuration
    Yahan Li, Ping Xiao, Frimpong Boadu, Anna K. Goldkamp, Snehal Nirgude, Jianlin Jack Cheng, Darren E. Hagen, Jennifer M. Kalish, Rocío Melissa Rivera · 2023 · medRxiv
86. Comparative analysis of WC1.1+ and WC1.2+ γδ T cell subset responses from cattle naturally infected with Mycobacterium bovis to repeat stimulation with mycobacterial antigens
    Alia Parveen, Sajad Ahmad Bhat, Mahmoud M. Elnaggar, Kieran G. Meade · 2024 · PLoS ONE
87. Loci associated with spontaneous abortion in primiparous Holstein cattle
    Emaly M. Suarez, Victoria C. Kelson, Jennifer N. Kiser, Kimberly M Davenport, Brenda M. Murdoch, Allison L. Herrick, Holly L. Neibergs · 2025 · Frontiers in Veterinary Science
88. Unraveling genomic regions with transmission ratio distortion harboring putative lethal alleles and their biological implications in Nellore cattle from experimental selection lines
    Gustavo Roberto Dias Rodrigues, Luiz F. Brito, Lúcio Flávio Macêdo Mota, Joslaine Noely dos Santos Gonçalves Cyrillo, João Barbosa da Silva Neto, Milena A. F. Campos, Lenira El Faro, Lúcia Galvão de Albuquerque, Maria Eugênia Zerlotti Mercadante · 2025 · Journal of Animal Science
89. Genetic parameters of mid-infrared-predicted methane production and its relationship with production traits in Walloon Holstein dairy cows
    Hadi Atashi, Y. Chen, Katrien Wijnrocx, Hélène Soyeurt, Xavier Hubin, Nicolas Gengler · 2025 · Journal of Dairy Science
90. Genome-wide association analysis based on random regression models for milk urea nitrogen in Iranian Holstein cattle
    Mehridokht Mortazavi, Mohammad Bagher Zandi, Rostam Pahlavan, Moradpasha Eskandari Nasab, Henrique A. Mulim, Hinayah Rojas de Oliveira · 2025 · Dairy Science and Management
91. Whole-genome sequencing GWAS reveals bovine genomic effects on enteric methane emissions in beef cattle
    Leonardo Machestropa Arikawa, Lúcio Flávio Macêdo Mota, Larissa Fernanda Simielli Fonseca, Gerardo Alves Fernandes Júnior, Sindy Liliana Caivio Nasner, Júlia P. S. Valente, Tainara Luana da Silva Soares, Marcelo Sant’Ana Borges, Joel A. Silva, Amalia Mejia Pelaez et al. · 2025 · Scientific Reports
92. Genome-wide association study identifies significant SNPs for milk production and stature traits in Karan Fries cattle
    Pritam Pal, Ishmeet Kumar, Manisha Choudhary, Amritanshu Upadhyay, Irusappan Ilayaraja, Anil Chitra, Lal Muansangi, Gopal Ramdasji Gowane, T V RAJA, Anupama Mukherjee et al. · 2026 · Mammalian Genome
93. DNA methylation patterns and gene expression from amygdala tissue of mature Brahman cows exposed to prenatal stress
    Emilie C. Baker, Audrey L Earnhardt, Kubra Z. Cilkiz, Haley C Collins, Brittni P Littlejohn, Rodolfo C. Cardoso, Noushin Ghaffari, Charles R. Long, Penny K. Riggs, R.D. Randel et al. · 2022 · Frontiers in Genetics
94. 252. Comparison of methods for building pangenome graphs
    Danang Crysnanto, Alexander S. Leonard, Hubert Pausch · 2022 · World Congress on Genetics Applied to Livestock Production (WCGALP)
95. Inference of ancestral alleles in the pig reference genome
    Yan Chen, Hai‐Bing Xie, Adeniyi C. Adeola, Yuhua Fu, Xiaolei Liu, Shuhong Zhao, Jianlin Han, Min‐Sheng Peng, Ya‐Ping Zhang · 2023 · Animal Genetics
96. Variance component estimates for growth traits in beef cattle using selected variants from imputed low-pass sequence data
    Chad A Russell, L. A. Kuehn, W. M. Snelling, Stephen D. Kachman, Matthew L Spangler · 2023 · Journal of Animal Science
97. Transcriptomic profiling of gastrointestinal tracts in dairy cattle during lactation reveals molecular adaptations for milk synthesis
    Yahui Gao, George E. Liu, Li Ma, Lingzhao Fang, Congjun Li, R.L. Baldwin · 2024 · Journal of Advanced Research
98. Effect of enhanced plane of nutrition in early life on the transcriptome and proteome of the anterior pituitary gland in Angus heifer calves
    Kate A. Keogh, A. K. Kelly, David Anthony Kenny · 2024 · BMC Genomics
99. Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations
    Gillian P. McHugo, James A. Ward, Said Ismael Ng’ang’a, Laurent Frantz, Michael Salter‐Townshend, Emmeline Wynne Hill, Grace M. O’Gorman, Kieran G. Meade, Thomas Jonathan Hall, David Evan MacHugh · 2024 · Heredity
100. Genomic Regions Associated with Spontaneous Abortion in Holstein Heifers
     Emaly M. Suarez, Victoria C. Kelson, Jennifer N. Kiser, Kimberly M Davenport, Brenda M. Murdoch, Holly L. Neibergs · 2024 · Genes