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AAindex: Amino Acid Index Database
Open accessAbstract
AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. It consists of two sections: AAindex1 for the amino acid index of 20 numerical values and AAindex2 for the amino acid mutation matrix of 210 numerical values. Each entry of either AAindex1 or AAindex2 consists of the definition, the reference information, a list of related entries in terms of the correlation coefficient, and the actual data. The database may be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.ad. jp/dbget/) or may be downloaded by anonymous FTP (ftp://ftp.genome. ad.jp/db/genomenet/aaindex/).
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Cited by
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Better prediction of functional effects for sequence variants
Hecht, M., Bromberg, Y., & Rost, B. (2015) · BMC Genomics · doi:10.1186/1471-2164-16-s8-s1 · Cited by 569
mCSM-PPI2: predicting the effects of mutations on protein–protein interactions
Rodrigues, C. H. M., Myung, Y., Pires, D. E. V., & Ascher, D. B. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz383 · Cited by 369
Rao, H. B., Zhu, F., Yang, G. B., Li, Z. R., & Chen, Y. Z. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr284 · Cited by 359
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Metadata
- Authors
- Kawashima, S., Ogata, H., & Kanehisa, M.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 1999-01-01
- Volume
- 27
- Issue
- 1
- Pages
- 368-369
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2014731953
- Cited by
- 1,012
- References
- 0
- FWCI
- 2.28
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Kawashima, S., Ogata, H., & Kanehisa, M. (1999). AAindex: Amino Acid Index Database. Nucleic Acids Research. https://doi.org/10.1093/nar/27.1.368
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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