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The RDP (Ribosomal Database Project) continues

Open access
Maidak, B. L.·2000·Nucleic Acids Research

Abstract

The Ribosomal Database Project (RDP-II), previously described by Maidak et al., continued during the past year to add new rRNA sequences to the aligned data and to improve the analysis commands. Release 7.1 (September 17, 1999) included more than 10 700 small subunit rRNA sequences. More than 850 type strain sequences were identified and added to the prokaryotic alignment, bringing the total number of type sequences to 3324 representing 2460 different species. Availability of an RDP-II mirror site in Japan is also near completion. RDP-II provides aligned and annotated rRNA sequences, derived phylogenetic trees and taxonomic hierarchies, and analysis services through its WWW server (http://rdp.cme.msu.edu/ ). Analysis services include rRNA probe checking, approx-i-mate phylogenetic placement of user sequences, screening user sequences for possible chimeric rRNA sequences, automated alignment, production of similarity matrices and services to plan and analyze terminal restriction fragment length polymorphism (T-RFLP) experiments.

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Metadata

Authors
Maidak, B. L.
Venue
Nucleic Acids Research
Published
2000-01-01
Volume
28
Issue
1
Pages
173-174
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2104145483
Cited by
643
References
1
FWCI
28.28
Type
journal article
Language
en
Open access
bronze

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