The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
REPuter: the manifold applications of repeat analysis on a genomic scale
Open accessAbstract
The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmic support. The REPuter program described herein was designed to serve as a fundamental tool in such studies. Efficient and complete detection of various types of repeats is provided together with an evaluation of significance and interactive visualization. This article circumscribes the wide scope of repeat analysis using applications in five different areas of sequence analysis: checking fragment assemblies, searching for low copy repeats, finding unique sequences, comparing gene structures and mapping of cDNA/EST sequences.
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Citations
Cites
Tandem repeats finder: a program to analyze DNA sequences
Benson, G. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.2.573 · Cited by 9,374
Short-sequence DNA repeats in prokaryotic genomes
van Belkum, A., Scherer, S., van Alphen, L., & Verbrugh, H. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.2.275-293.1998 · Cited by 737
Cited by
Versatile and open software for comparing large genomes
Kurtz, S., Phillippy, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C., & Salzberg, S. L. (2004) · Genome Biology · doi:10.1186/gb-2004-5-2-r12 · Cited by 5,254
Self-citationGrissa, I., Vergnaud, G., & Pourcel, C. (2007) · BMC Bioinformatics · doi:10.1186/1471-2105-8-172 · Cited by 888
Makałowski, W., Gotea, V., Pande, A., & Makałowska, I. (2019) · Methods in Molecular Biology · doi:10.1007/978-1-4939-9074-0_6 · Cited by 127
Genome plasticity in Candida albicans is driven by long repeat sequences
Todd, R. T., Wikoff, T. D., Forche, A., & Selmecki, A. (2019) · eLife · doi:10.7554/elife.45954 · Cited by 118
Application of a superword array in genome assembly
Huang, X. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj419 · Cited by 30
Metadata
- Authors
- Kurtz, S.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2001-11-15
- Volume
- 29
- Issue
- 22
- Pages
- 4633-4642
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2124281279
- Cited by
- 2,618
- References
- 2
- FWCI
- 7.38
- Type
- journal article
- Language
- en
- Open access
- bronze
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