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Mapping adenines, guanines, and pyrimidines in RNA
Open accessAbstract
The positions of adenines, guanines, and pyrimidines can be determined by partial nuclease digestion of a terminally labeles RNA molecule. In urea, at elevated temperatures, RNase T1 generates a pattern reflecting cleavage at guanines while RNase U2 cleaves only at adenine. A limited alkaline hydrolysis provides a continuum of fragments derived from breaks at every phosphodiester bond. The reaction products are electrophoretically fractionated by size in adjacent lanes of a polyacrylamide gel. An autoradiograph of the gel displays the sequence up to 100 nucleotides from the end of the molecule, although uracil cannot as yet be distinguished from cytosine. These techniques form the basis of an RNA sequencing method and are demonstrated on yeast 5.8S ribosomal RNA.
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Cited by
Kruger, K., Grabowski, P. J., Zaug, A. J., Sands, J., Gottschling, D. E., & Cech, T. R. (1982) · Cell · doi:10.1016/0092-8674(82)90414-7 · Cited by 2,331
Direct chemical method for sequencing RNA.
Peattie, D. A. (1979) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.76.4.1760 · Cited by 940
3′-Terminal labelling of RNA with T4 RNA ligase
ENGLAND, T. E., & UHLENBECK, O. C. (1978) · Nature · doi:10.1038/275560a0 · Cited by 555
Sequence requirements of the hammerhead RNA self-cleavage reaction
Ruffner, D. E., Stormo, G. D., & Uhlenbeck, O. C. (1990) · Biochemistry · doi:10.1021/bi00499a018 · Cited by 470
[67] A molecular titration assay to measure transcript prevalence levels
Lee, J. J., & Costlow, N. A. (1987) · Methods in Enzymology · doi:10.1016/0076-6879(87)52070-5 · Cited by 149
Metadata
- Authors
- Donis-Keller, H., Maxam, A. M., & Gilbert, W.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 1977
- Volume
- 4
- Issue
- 8
- Pages
- 2527-2538
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W1970667469
- Cited by
- 1,371
- References
- 0
- FWCI
- 42.50
- Type
- journal article
- Language
- en
- Open access
- green
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- Donis-Keller, H., Maxam, A. M., & Gilbert, W. (1977). Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Research. https://doi.org/10.1093/nar/4.8.2527
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