The DOI matches its Crossref record; 14 of the 14 references it cites were found in a registry or an index.
Ensembl 2021
Open accessAbstract
The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomics by inferring the evolutionary history of genes and genomes. Our integrated genomic data are made available in a variety of ways, including genome browsers, search interfaces, specialist tools such as the Ensembl Variant Effect Predictor, download files and programmatic interfaces. Here, we present recent Ensembl developments including two new website portals. Ensembl Rapid Release (http://rapid.ensembl.org) is designed to provide core tools and services for genomes as soon as possible and has been deployed to support large biodiversity sequencing projects. Our SARS-CoV-2 genome browser (https://covid-19.ensembl.org) integrates our own annotation with publicly available genomic data from numerous sources to facilitate the use of genomics in the international scientific response to the COVID-19 pandemic. We also report on other updates to our annotation resources, tools and services. All Ensembl data and software are freely available without restriction.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
An integrated encyclopedia of DNA elements in the human genome
The ENCODE Project Consortium (2012) · Nature · doi:10.1038/nature11247 · Cited by 18,072
A new coronavirus associated with human respiratory disease in China
Wu, F., Zhao, S., Yu, B., Chen, Y.-M., Wang, W., Song, Z.-G., Hu, Y., Tao, Z.-W., Tian, J.-H., Pei, Y.-Y., et al. (2020) · Nature · doi:10.1038/s41586-020-2008-3 · Cited by 11,688
UniProt: a worldwide hub of protein knowledge
The UniProt Consortium (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1049 · Cited by 7,698
dbSNP: the NCBI database of genetic variation
Sherry, S. T. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.308 · Cited by 7,502
Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium, Kundaje, A., Meuleman, W., Ernst, J., Bilenky, M., Yen, A., Heravi-Moussavi, A., Kheradpour, P., Zhang, Z., Wang, J., et al. (2015) · Nature · doi:10.1038/nature14248 · Cited by 6,368 · cited 1×
“Our GRCh37 regulatory annotation now represents over 100 human epigenomes, cataloguing over half a million elements covering 16% of the genome from over 9TB of experimental data from the Roadmap Epigenomics (24), ENCODE (25) and BLUEPRINT (26) projects.”
BackgroundO'Leary, N. A., Wright, M. W., Brister, J. R., Ciufo, S., Haddad, D., McVeigh, R., Rajput, B., Robbertse, B., Smith-White, B., Ako-Adjei, D., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1189 · Cited by 6,357
ClinVar: public archive of relationships among sequence variation and human phenotype
Landrum, M. J., Lee, J. M., Riley, G. R., Jang, W., Rubinstein, W. S., Church, D. M., & Maglott, D. R. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1113 · Cited by 3,516
Nextstrain: real-time tracking of pathogen evolution
Hadfield, J., Megill, C., Bell, S. M., Huddleston, J., Potter, B., Callender, C., Sagulenko, P., Bedford, T., & Neher, R. A. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty407 · Cited by 3,154
Ceballos, G., Ehrlich, P. R., & Dirzo, R. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1704949114 · Cited by 2,663 · cited 1×
“At the same time, we are in the midst of the sixth mass extinction (14), and loss of biodiversity is entwined with many of the key challenges faced by human society today including pandemic zoonotic diseases, climate change, food security, availability of drugs and vaccines, and renewable energy.”
BackgroundThe DisGeNET knowledge platform for disease genomics: 2019 update
Piñero, J., Ramírez-Anguita, J. M., Saüch-Pitarch, J., Ronzano, F., Centeno, E., Sanz, F., & Furlong, L. I. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz1021 · Cited by 2,639
Cited by
Search and sequence analysis tools services from EMBL-EBI in 2022
Madeira, F., Pearce, M., Tivey, A. R. N., Basutkar, P., Lee, J., Edbali, O., Madhusoodanan, N., Kolesnikov, A., & Lopez, R. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac240 · Cited by 2,267
Cunningham, F., Allen, J. E., Allen, J., Alvarez-Jarreta, J., Amode, M. R., Armean, I. M., Austine-Orimoloye, O., Azov, A. G., Barnes, I., Bennett, R., et al. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkab1049 · Cited by 1,923
Self-citationHarrison, P. W., Amode, M. R., Austine-Orimoloye, O., Azov, A. G., Barba, M., Barnes, I., Becker, A., Bennett, R., Berry, A., Bhai, J., et al. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkad1049 · Cited by 742
Self-citationRare variant contribution to human disease in 281,104 UK Biobank exomes
Wang, Q., Dhindsa, R. S., Carss, K., Harper, A. R., Nag, A., Tachmazidou, I., Vitsios, D., Deevi, S. V. V., Mackay, A., Muthas, D., et al. (2021) · Nature · doi:10.1038/s41586-021-03855-y · Cited by 604
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
Kuznetsov, D., Tegenfeldt, F., Manni, M., Seppey, M., Berkeley, M., Kriventseva, E. V., & Zdobnov, E. M. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkac998 · Cited by 522
Metadata
- Authors
- Howe, K. L., Achuthan, P., Allen, J., Allen, J., Alvarez-Jarreta, J., Amode, M. R., Armean, I. M., Azov, A. G., Bennett, R., Bhai, J., Billis, K., Boddu, S., Charkhchi, M., Cummins, C., Da Rin Fioretto, L., Davidson, C., Dodiya, K., El Houdaigui, B., Fatima, R., Gall, A., Garcia Giron, C., Grego, T., Guijarro-Clarke, C., Haggerty, L., Hemrom, A., Hourlier, T., Izuogu, O. G., Juettemann, T., Kaikala, V., Kay, M., Lavidas, I., Le, T., Lemos, D., Gonzalez Martinez, J., Marugán, J. C., Maurel, T., McMahon, A. C., Mohanan, S., Moore, B., Muffato, M., Oheh, D. N., Paraschas, D., Parker, A., Parton, A., Prosovetskaia, I., Sakthivel, M. P., Salam, A. I. A., Schmitt, B. M., Schuilenburg, H., Sheppard, D., Steed, E., Szpak, M., Szuba, M., Taylor, K., Thormann, A., Threadgold, G., Walts, B., Winterbottom, A., Chakiachvili, M., Chaubal, A., De Silva, N., Flint, B., Frankish, A., Hunt, S. E., IIsley, G. R., Langridge, N., Loveland, J. E., Martin, F. J., Mudge, J. M., Morales, J., Perry, E., Ruffier, M., Tate, J., Thybert, D., Trevanion, S. J., Cunningham, F., Yates, A. D., Zerbino, D. R., & Flicek, P.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2020-11-02
- Volume
- 49
- Issue
- D1
- Pages
- D884-D891
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W4205247356
- Cited by
- 1,568
- References
- 14
- FWCI
- 81.87
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Ensembl 2021. https://app.cochat.ai/papers/10.1093/nar/gkaa942
- The paper
- Howe, K. L., Achuthan, P., Allen, J., Allen, J., Alvarez-Jarreta, J., Amode, M. R., Armean, I. M., Azov, A. G., Bennett, R., Bhai, J., Billis, K., Boddu, S., Charkhchi, M., Cummins, C., Da Rin Fioretto, L., Davidson, C., Dodiya, K., El Houdaigui, B., Fatima, R., . . . Flicek, P. (2021). Ensembl 2021. Nucleic Acids Research. https://doi.org/10.1093/nar/gkaa942
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.