The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users
Open accessAbstract
The SIB Swiss Institute of Bioinformatics (https://www.sib.swiss) creates, maintains and disseminates a portfolio of reliable and state-of-the-art bioinformatics services and resources for the storage, analysis and interpretation of biological data. Through Expasy (https://www.expasy.org), the Swiss Bioinformatics Resource Portal, the scientific community worldwide, freely accesses more than 160 SIB resources supporting a wide range of life science and biomedical research areas. In 2020, Expasy was redesigned through a user-centric approach, known as User-Centred Design (UCD), whose aim is to create user interfaces that are easy-to-use, efficient and targeting the intended community. This approach, widely used in other fields such as marketing, e-commerce, and design of mobile applications, is still scarcely explored in bioinformatics. In total, around 50 people were actively involved, including internal stakeholders and end-users. In addition to an optimised interface that meets users' needs and expectations, the new version of Expasy provides an up-to-date and accurate description of high-quality resources based on a standardised ontology, allowing to connect functionally-related resources.
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Cites
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Database resources of the National Center for Biotechnology Information: update
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EMBOSS: the European molecular biology open software suite.
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UniProt: a worldwide hub of protein knowledge
The UniProt Consortium (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1049 · Cited by 7,698
Nextstrain: real-time tracking of pathogen evolution
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ExPASy: SIB bioinformatics resource portal
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Self-citationA mathematical model of the finding of usability problems
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New and continuing developments at PROSITE
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Database resources of the National Center for Biotechnology Information
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Cited by
Barbarin-Bocahu, I., & Graille, M. (2022) · Acta Crystallographica Section D Structural Biology · doi:10.1107/s2059798322002157 · Cited by 52
Toward a health-associated core keystone index for the human gut microbiome
Goel, A., Shete, O., Goswami, S., Samal, A., C.B., L., Kedia, S., Ahuja, V., O’Toole, P. W., Shanahan, F., & Ghosh, T. S. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.115378 · Cited by 37
Conformational transitions of the Spindly adaptor underlie its interaction with Dynein and Dynactin
d’Amico, E. A., Ud Din Ahmad, M., Cmentowski, V., Girbig, M., Müller, F., Wohlgemuth, S., Brockmeyer, A., Maffini, S., Janning, P., Vetter, I. R., et al. (2022) · Journal of Cell Biology · doi:10.1083/jcb.202206131 · Cited by 34
IntEnzyDB: an Integrated Structure–Kinetics Enzymology Database
Yan, B., Ran, X., Gollu, A., Cheng, Z., Zhou, X., Chen, Y., & Yang, Z. J. (2022) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.2c01139 · Cited by 23
Deep embeddings to comprehend and visualize microbiome protein space
Odrzywolek, K., Karwowska, Z., Majta, J., Byrski, A., Milanowska-Zabel, K., & Kosciolek, T. (2022) · Scientific Reports · doi:10.1038/s41598-022-14055-7 · Cited by 22
Metadata
- Authors
- Duvaud, S., Gabella, C., Lisacek, F., Stockinger, H., Ioannidis, V., & Durinx, C.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2021-04-13
- Volume
- 49
- Issue
- W1
- Pages
- W216-W227
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W3156288747
- Cited by
- 991
- References
- 34
- FWCI
- 129.80
- Type
- journal article
- Language
- en
- Open access
- gold
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- Duvaud, S., Gabella, C., Lisacek, F., Stockinger, H., Ioannidis, V., & Durinx, C. (2021). Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users. Nucleic Acids Research. https://doi.org/10.1093/nar/gkab225
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
