The DOI matches its Crossref record; 10 of the 10 references it cites were found in a registry or an index.
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data
Open accessAbstract
PlasmoDB (http://PlasmoDB.org) is the official database of the Plasmodium falciparum genome sequencing consortium. This resource incorporates the recently completed P. falciparum genome sequence and annotation, as well as draft sequence and annotation emerging from other Plasmodium sequencing projects. PlasmoDB currently houses information from five parasite species and provides tools for intra- and inter-species comparisons. Sequence information is integrated with other genomic-scale data emerging from the Plasmodium research community, including gene expression analysis from EST, SAGE and microarray projects and proteomics studies. The relational schema used to build PlasmoDB, GUS (Genomics Unified Schema) employs a highly structured format to accommodate the diverse data types generated by sequence and expression projects. A variety of tools allow researchers to formulate complex, biologically-based, queries of the database. A stand-alone version of the database is also available on CD-ROM (P. falciparum GenePlot), facilitating access to the data in situations where internet access is difficult (e.g. by malaria researchers working in the field). The goal of PlasmoDB is to facilitate utilization of the vast quantities of genomic-scale data produced by the global malaria research community. The software used to develop PlasmoDB has been used to create a second Apicomplexan parasite genome database, ToxoDB (http://ToxoDB.org).
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Cites
Genome sequence of the human malaria parasite Plasmodium falciparum
Gardner, M. J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R. W., Carlton, J. M., Pain, A., Nelson, K. E., Bowman, S., et al. (2002) · Nature · doi:10.1038/nature01097 · Cited by 4,407
A proteomic view of the Plasmodium falciparum life cycle
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Prediction of MHC class I binding peptides, using SVMHC
Dönnes, P., & Elofsson, A. (2002) · BMC Bioinformatics · doi:10.1186/1471-2105-3-25 · Cited by 330
ToxoDB: accessing the Toxoplasma gondii genome
Kissinger, J. C. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg072 · Cited by 224
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources
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The Plasmodium genome database
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Self-citationChromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum
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The Plasmodium falciparum Genome Project
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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
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Self-citationInnovative lead discovery strategies for tropical diseases
Nwaka, S., & Hudson, A. (2006) · Nature Reviews Drug Discovery · doi:10.1038/nrd2144 · Cited by 521
New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq
Otto, T. D., Wilinski, D., Assefa, S., Keane, T. M., Sarry, L. R., Böhme, U., Lemieux, J., Barrell, B., Pain, A., Berriman, M., et al. (2010) · Molecular Microbiology · doi:10.1111/j.1365-2958.2009.07026.x · Cited by 406
Distinct physiological states of Plasmodium falciparum in malaria-infected patients
Daily, J. P., Scanfeld, D., Pochet, N., Le Roch, K., Plouffe, D., Kamal, M., Sarr, O., Mboup, S., Ndir, O., Wypij, D., et al. (2007) · Nature · doi:10.1038/nature06311 · Cited by 279
Aurrecoechea, C., Brestelli, J., Brunk, B. P., Carlton, J. M., Dommer, J., Fischer, S., Gajria, B., Gao, X., Gingle, A., Grant, G., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn631 · Cited by 264
Metadata
- Authors
- Bahl, A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-01-01
- Volume
- 31
- Issue
- 1
- Pages
- 212-215
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2123179582
- Cited by
- 371
- References
- 10
- FWCI
- 28.02
- Type
- journal article
- Language
- en
- Open access
- bronze
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