The DOI matches its Crossref record; 16 of the 16 references it cites were found in a registry or an index.
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
Open accessAbstract
GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data.
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Cites
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Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis
Carlton, J. M., Hirt, R. P., Silva, J. C., Delcher, A. L., Schatz, M., Zhao, Q., Wortman, J. R., Bidwell, S. L., Alsmark, U. C. M., Besteiro, S., et al. (2007) · Science · doi:10.1126/science.1132894 · Cited by 818
Self-citationGenomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia
Morrison, H. G., McArthur, A. G., Gillin, F. D., Aley, S. B., Adam, R. D., Olsen, G. J., Best, A. A., Cande, W. Z., Chen, F., Cipriano, M. J., et al. (2007) · Science · doi:10.1126/science.1143837 · Cited by 793
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ToxoDB: an integrated Toxoplasma gondii database resource
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Cited by
eggNOG v4.0: nested orthology inference across 3686 organisms
Powell, S., Forslund, K., Szklarczyk, D., Trachana, K., Roth, A., Huerta-Cepas, J., Gabaldón, T., Rattei, T., Creevey, C., Kuhn, M., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1253 · Cited by 652
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
Ostlund, G., Schmitt, T., Forslund, K., Kostler, T., Messina, D. N., Roopra, S., Frings, O., & Sonnhammer, E. L. L. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp931 · Cited by 623
Xu, F., Jerlström-Hultqvist, J., Einarsson, E., Ástvaldsson, Á., Svärd, S. G., & Andersson, J. O. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004053 · Cited by 74
Isolation and partial characterization of an immunogenic antigen of Giardia lamblia
Quintero, J., Valdez, A., Samaniego, B., Lopez-Romero, G., Astiazaran-Garcia, H., Rascon, L., Breci, L., Garibay-Escobar, A., Robles-Zepeda, R., & Velazquez, C. (2017) · Parasitology International · doi:10.1016/j.parint.2017.01.007 · Cited by 8
Metadata
- Authors
- Aurrecoechea, C., Brestelli, J., Brunk, B. P., Carlton, J. M., Dommer, J., Fischer, S., Gajria, B., Gao, X., Gingle, A., Grant, G., Harb, O. S., Heiges, M., Innamorato, F., Iodice, J., Kissinger, J. C., Kraemer, E., Li, W., Miller, J. A., Morrison, H. G., Nayak, V., Pennington, C., Pinney, D. F., Roos, D. S., Ross, C., Stoeckert, C. J., Sullivan, S., Treatman, C., & Wang, H.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-01-01
- Volume
- 37
- Issue
- Database
- Pages
- D526-D530
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2158676715
- Cited by
- 264
- References
- 16
- FWCI
- 10.67
- Type
- journal article
- Language
- en
- Open access
- gold
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- CoChat. (2026). Citation check: GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. https://app.cochat.ai/papers/10.1093/nar/gkn631
- The paper
- Aurrecoechea, C., Brestelli, J., Brunk, B. P., Carlton, J. M., Dommer, J., Fischer, S., Gajria, B., Gao, X., Gingle, A., Grant, G., Harb, O. S., Heiges, M., Innamorato, F., Iodice, J., Kissinger, J. C., Kraemer, E., Li, W., Miller, J. A., Morrison, H. G., . . . Wang, H. (2009). GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Research. https://doi.org/10.1093/nar/gkn631
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
