The DOI matches its Crossref record; 32 of the 32 references it cites were found in a registry or an index.
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models
Open accessAbstract
The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL. The Repository currently contains about 300,000 three-dimensional models for sequences from the Swiss-Prot and TrEMBL databases. The content of the Repository is updated on a regular basis incorporating new sequences, taking advantage of new template structures becoming available and reflecting improvements in the underlying modelling algorithms. Each entry consists of one or more three-dimensional protein models, the superposed template structures, the alignments on which the models are based, a summary of the modelling process and a force field based quality assessment. The SWISS-MODEL Repository can be queried via an interactive website at http://swissmodel.expasy. org/repository/. Annotation and cross-linking of the models with other databases, e.g. Swiss-Prot on the ExPASy server, allow for seamless navigation between protein sequence and structure information. The aim of the SWISS-MODEL Repository is to provide access to an up-to-date collection of annotated three-dimensional protein models generated by automated homology modelling, bridging the gap between sequence and structure databases.
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Citations
Cites
SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling
Guex, N., & Peitsch, M. C. (1997) · ELECTROPHORESIS · doi:10.1002/elps.1150181505 · Cited by 11,241
SWISS-MODEL: an automated protein homology-modeling server
Schwede, T. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg520 · Cited by 5,606
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
Boeckmann, B. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg095 · Cited by 3,890
Comparative Protein Structure Modeling of Genes and Genomes
Martí-Renom, M. A., Stuart, A. C., Fiser, A., Sánchez, R., Melo, F., & Šali, A. (2000) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.29.1.291 · Cited by 3,169
RASMOL: biomolecular graphics for all
Sayle, R. (1995) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(00)89080-5 · Cited by 2,575
ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling
Peitsch, M. C. (1996) · Biochemical Society Transactions · doi:10.1042/bst0240274 · Cited by 932
The InterPro Database, 2003 brings increased coverage and new features
Mulder, N. J. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg046 · Cited by 689
Assessing protein structures with a non-local atomic interaction energy
Melo, F., & Feytmans, E. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1665 · Cited by 501
SCOP database in 2002: refinements accommodate structural genomics
Conte, L. L. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.264 · Cited by 459
The Protein Data Bank and structural genomics
Westbrook, J. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg068 · Cited by 405
Cited by
Guex, N., Peitsch, M. C., & Schwede, T. (2009) · ELECTROPHORESIS · doi:10.1002/elps.200900140 · Cited by 2,097
Morin, R. D., Johnson, N. A., Severson, T. M., Mungall, A. J., An, J., Goya, R., Paul, J. E., Boyle, M., Woolcock, B. W., Kuchenbauer, F., et al. (2010) · Nature Genetics · doi:10.1038/ng.518 · Cited by 1,521
Yam, A. Y., Xia, Y., Lin, H.-T. J., Burlingame, A., Gerstein, M., & Frydman, J. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1515 · Cited by 420
Utility of homology models in the drug discovery process
Hillisch, A., Pineda, L. F., & Hilgenfeld, R. (2004) · Drug Discovery Today · doi:10.1016/s1359-6446(04)03196-4 · Cited by 310
Bulek, K., Liu, C., Swaidani, S., Wang, L., Page, R. C., Gulen, M. F., Herjan, T., Abbadi, A., Qian, W., Sun, D., et al. (2011) · Nature Immunology · doi:10.1038/ni.2080 · Cited by 192
Metadata
- Authors
- Kopp, J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-01-01
- Volume
- 32
- Issue
- 90001
- Pages
- 230D-234
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2015461045
- Cited by
- 332
- References
- 32
- FWCI
- 3.54
- Type
- journal article
- Language
- en
- Open access
- green
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
