Cited by 530Developmental Biology and Gene RegulationGenomics and Chromatin DynamicsBioinformatics and Genomic Networks

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GenePaint.org: an atlas of gene expression patterns in the mouse embryo

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Visel, A.·2004·Nucleic Acids Research

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Abstract

High-throughput instruments were recently developed to determine gene expression patterns on tissue sections by RNA in situ hybridization. The resulting images of gene expression patterns, chiefly of E14.5 mouse embryos, are accessible to the public at http://www.genepaint.org. This relational database is searchable for gene identifiers and RNA probe sequences. Moreover, patterns and intensity of expression in approximately 100 different embryonic tissues are annotated and can be searched using a standardized catalog of anatomical structures. A virtual microscope tool, the Zoom Image Server, was implemented in GenePaint.org and permits interactive zooming and panning across approximately 15,000 high-resolution images.

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Authors: Visel, A.
Affiliations: Max Planck Society (DE)
Corresponding author: Visel, A.
ORCID: Visel, A.
Venue: Nucleic Acids Research
Publisher: Oxford University Press (OUP)
Published: 2004-01-01
Volume: 32
Issue: 90001
Pages: 552D-556
ISSN: 0305-1048 (ISSN-L)
1362-4962
DOI: 10.1093/nar/gkh029
PMC: PMC308763
OpenAlex: W1985901090
Cited by: 528
References: 15
Citations by year: 2026: 13 · 2025: 17 · 2024: 26 · 2023: 25 · 2022: 15 · 2021: 25 · 2020: 23 · 2019: 27 · 2018: 16 · 2017: 16 · 2016: 28 · 2015: 27 · 2014: 25 · 2013: 38 · 2012: 21
FWCI: 3.57
Type: journal article
Language: en
Open access: bronze
doi.org
Locations: Nucleic Acids Research (publishedVersion)
Europe PMC (PubMed Central) (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
Max Planck Institute for Plasma Physics (submittedVersion)
MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
Funders: European Commission
Boehringer Ingelheim Fonds
Max-Planck-Gesellschaft
National Institute of Neurological Disorders and Stroke
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
Keywords: gene expression patterns, mouse embryo, E14.5, RNA in situ hybridization, relational databases, virtual microscope, gene expression atlas
MeSH terms: Animals, Brain, Embryo, Mammalian, RNA, Messenger, Software, RNA Probes, Information Storage and Retrieval, In Situ Hybridization, Gene Expression Regulation, Developmental, Computational Biology, Internet, Gene Expression Profiling, Databases, Genetic, Mice

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GenePaint.org: an atlas of gene expression patterns in the mouse embryo

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