Aptamer database

In vitro selection of RNA molecules that bind specific ligands

Ellington, A. D., & Szostak, J. W. (1990) · Nature · doi:10.1038/346818a0 · Cited by 9,845 · see citing works

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

Zuker, M., & Stiegler, P. (1981) · Nucleic Acids Research · doi:10.1093/nar/9.1.133 · Cited by 3,604 · see citing works

Selection of single-stranded DNA molecules that bind and inhibit human thrombin

Bock, L. C., Griffin, L. C., Latham, J. A., Vermaas, E. H., & Toole, J. J. (1992) · Nature · doi:10.1038/355564a0 · Cited by 2,460 · see citing works

Fast folding and comparison of RNA secondary structures

Hofacker, I. L., Fontana, W., Stadler, P. F., Bonhoeffer, S., Tacker, M., & Schuster, P. M. (1994) · Monatshefte für Chemie - Chemical Monthly · doi:10.1007/bf00818163 · Cited by 2,314 · see citing works

Aptamers: An Emerging Class of Molecules That Rival Antibodies in Diagnostics

Jayasena, S. D. (1999) · Clinical Chemistry · doi:10.1093/clinchem/45.9.1628 · Cited by 2,146 · see citing works

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

McCaskill, J. S. (1990) · Biopolymers · doi:10.1002/bip.360290621 · Cited by 1,288 · see citing works

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

Winkler, W. C., Nahvi, A., & Breaker, R. R. (2002) · Nature · doi:10.1038/nature01145 · Cited by 1,241 · see citing works

Computational identification of Cis -regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae 1 1Edited by F. E. Cohen

Hughes, J. D., Estep, P. W., Tavazoie, S., & Church, G. M. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3519 · Cited by 1,008 · see citing works

An mRNA structure that controls gene expression by binding FMN

Winkler, W. C., Cohen‐Chalamish, S., & Breaker, R. R. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.212628899 · Cited by 698 · see citing works

Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen.

Lupold, S. E., Hicke, B. J., Lin, Y. H., & Coffey, D. S. (2002) · PubMed · Cited by 564 · see citing works

Aptamers as therapeutic and diagnostic agents

Brody, E. N., & Gold, L. (2000) · Reviews in Molecular Biotechnology · doi:10.1016/s1389-0352(99)00004-5 · Cited by 495 · see citing works

Selection of Optimal κB/Rel DNA-Binding Motifs: Interaction of Both Subunits of NF-κB with DNA Is Required for Transcriptional Activation

KUNSCH, C. A., Ruben, S. M., & Rosen, C. A. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.10.4412-4421.1992 · Cited by 488 · see citing works

An mRNA structure that controls gene expression by binding S-adenosylmethionine

Winkler, W. C., Nahvi, A., Sudarsan, N., Barrick, J. E., & Breaker, R. R. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb967 · Cited by 458 · see citing works

Structurally Complex and Highly Active RNA Ligases Derived from Random RNA Sequences

Ekland, E. H., Szostak, J. W., & Bartel, D. P. (1995) · Science · doi:10.1126/science.7618102 · Cited by 422 · see citing works

One sequence, two ribozymes: implications for the emergence of new ribozyme folds

Schultes, E. A., & Bartel, D. P. (2000) · Science · doi:10.1126/science.289.5478.448 · Cited by 364 · see citing works

RNA-catalysed nucleotide synthesis

Unrau, P. J., & Bartel, D. P. (1998) · Nature · doi:10.1038/26193 · Cited by 310 · see citing works

Exceptionally Stable Nucleic Acid Hairpins

Varani, G. (1995) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.bb.24.060195.002115 · Cited by 306 · see citing works

All you wanted to know about SELEX

Klug, S. J., & Famulok, M. (1994) · Molecular Biology Reports · doi:10.1007/bf00996358 · Cited by 275 · see citing works

High-throughput SELEX–SAGE method for quantitative modeling of transcription-factor binding sites

Roulet, E., Busso, S., Camargo, A. A., Simpson, A. J. G., Mermod, N., & Bücher, P. (2002) · Nature Biotechnology · doi:10.1038/nbt718 · Cited by 221 · see citing works

Noncoding RNA genes identified in AT-rich hyperthermophiles

Klein, R. J., Misulovin, Z., & Eddy, S. R. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.112063799 · Cited by 183 · see citing works

Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond

Ding, Y. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.5.1034 · Cited by 161 · see citing works

Aptamer structures from A to ζ

Feigon, J. F., Dieckmann, T., & Smith, F. W. (1996) · Chemistry & Biology · doi:10.1016/s1074-5521(96)90127-1 · Cited by 136 · see citing works

Selection and Characterization of an RNA Decoy for Transcription Factor NF-κB

Lebruska, L. L., & Maher, L. J. (1999) · Biochemistry · doi:10.1021/bi982515x · Cited by 117 · see citing works

Aptamers as Tools in Molecular Biology and Immunology

Famulok, M., & Mayer, G. (1999) · Current topics in microbiology and immunology · doi:10.1007/978-3-642-60142-2_7 · Cited by 112 · see citing works

RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop 1 1Edited by J. Dovdna

Sorin, E. J., Engelhardt, M. A., Herschlag, D., et al. (2002) · Journal of Molecular Biology · doi:10.1006/jmbi.2002.5447 · Cited by 110 · see citing works

RNA sequence and secondary structure requiresments for rho-dependent transcription termination

Morgan, W. D., Bear, D. G., Litchman, B. L., et al. (1985) · Nucleic Acids Research · doi:10.1093/nar/13.10.3739 · Cited by 108 · see citing works

The joys of in vitro selection: chemically dressing oligonucleotides to satiate protein targets

Eaton, B. E. (1997) · Current Opinion in Chemical Biology · doi:10.1016/s1367-5931(97)80103-2 · Cited by 106 · see citing works

A tiny RNA that catalyzes both aminoacyl-RNA and peptidyl-RNA synthesis

Illangasekare, M., & Yarus, M. (1999) · RNA · doi:10.1017/s1355838299991264 · Cited by 104 · see citing works

Rho-dependent termination of transcription. I. Identification and characterization of termination sites for transcription from the bacteriophage lambda PR promoter.

Morgan, W. D., Bear, D. G., & von Hippel, P. H. (1983) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)44703-x · Cited by 87 · see citing works

Optimizing Aptamer Activity for Gene Therapy Applications Using Expression Cassette SELEX

Martell, R. E., Nevins, J. R., & Sullenger, B. A. (2002) · Molecular Therapy · doi:10.1006/mthe.2002.0624 · Cited by 72 · see citing works

Experimental and computational studies of the G[UUCG]C RNA tetraloop11Edited by I. Tinoco

Williams, D. J., & Hall, K. B. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3623 · Cited by 61 · see citing works

CASTing for multicomponent DNA-binding complexes

Wright, W. E., & Funk, W. D. (1993) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(93)90156-h · Cited by 52 · see citing works

Aptamers and aptazymes: accelerating small molecule drug discovery.

Burgstaller, P., Jenne, A., & Blind, M. (2002) · PubMed · Cited by 48 · see citing works

SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data

Ponomarenko, J. V. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.195 · Cited by 28 · see citing works

SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation

Ponomarenko, J. V. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.205 · Cited by 27 · see citing works

What's new in the library? What's new in GenBank? Let PubCrawler tell you

Hokamp, K. (1999) · Trends in Genetics · doi:10.1016/s0168-9525(99)01808-9 · Cited by 24 · see citing works

Molecular Dynamics Simulations of the Denaturation and Refolding of an RNA Tetraloop

Li, W., Ma, B., & Shapiro, B. A. (2001) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2001.10506748 · Cited by 22 · see citing works

Exceptionally Stable Nucleic Acid Hairpins

Varani, G. (1995) · Annual Review of Biophysics and Biomolecular Structure · doi:10.1146/annurev.biophys.24.1.379 · Cited by 7 · see citing works

Self-Capping RNA Catalysts Derived From Selection-Amplification

Huang, F., Yang, Z., & Yarus, M. (1999) · Biological Bulletin · doi:10.2307/1542959 · Cited by 2 · see citing works

Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments

Cruz-Toledo, J., McKeague, M., Zhang, X., Giamberardino, A., McConnell, E., Francis, T., DeRosa, M. C., & Dumontier, M. (2012) · Database · doi:10.1093/database/bas006 · Cited by 95 · see citing works

The prebiotic evolutionary advantage of transferring genetic information from RNA to DNA

Leu, K., Obermayer, B., Rajamani, S., Gerland, U., & Chen, I. A. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr525 · Cited by 85 · see citing works

Prebiotically plausible mechanisms increase compositional diversity of nucleic acid sequences

Derr, J., Manapat, M. L., Rajamani, S., Leu, K., Xulvi-Brunet, R., Joseph, I., Nowak, M. A., & Chen, I. A. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks065 · Cited by 74 · see citing works

Emerging affinity-based techniques in proteomics

Xie, S., Moya, C., Bilgin, B., Jayaraman, A., & Walton, S. P. (2009) · Expert Review of Proteomics · doi:10.1586/epr.09.74 · Cited by 38 · see citing works

Evolution of the division of labor between genes and enzymes in the RNA world

Boza, G., Szilágyi, A., Kun, Á., Santos, M., & Szathmáry, E. (2014) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003936 · Cited by 36 · see citing works

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database

Shafer, R. W. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.346 · Cited by 59 · see citing works

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database

Shafer, R. W., Stevenson, D., & Chan, B. K. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.348 · Cited by 907 · see citing works

The EMBL Nucleotide Sequence Database

Stoesser, G., Sterk, P. J., Tuli, M. A., et al. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.1.7 · Cited by 58 · see citing works

The EMBL nucleotide sequence database

Stoesser, G. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.1.8 · Cited by 84 · see citing works

A survey of genes in Eimeria tenella merozoites by EST sequencing1Note: Nucleotide sequence data reported in this paper are available in the GenBank™, EMBL and DDBJ databases under the accession numbers AI676260 through AI676754.1

Wan, K., Chong, S.-P., Ng, S.-T., et al. (1999) · International Journal for Parasitology · doi:10.1016/s0020-7519(99)00160-5 · Cited by 41 · see citing works