The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
Open accessAbstract
We present the YEAst Search for Transcriptional Regulators And Consensus Tracking (YEASTRACT; www.yeastract.com) database, a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. This database is a repository of 12 346 regulatory associations between transcription factors and target genes, based on experimental evidence which was spread throughout 861 bibliographic references. It also includes 257 specific DNA-binding sites for more than a hundred characterized transcription factors. Further information about each yeast gene included in the database was obtained from Saccharomyces Genome Database (SGD), Regulatory Sequences Analysis Tools and Gene Ontology (GO) Consortium. Computational tools are also provided to facilitate the exploitation of the gathered data when solving a number of biological questions as exemplified in the Tutorial also available on the system. YEASTRACT allows the identification of documented or potential transcription regulators of a given gene and of documented or potential regulons for each transcription factor. It also renders possible the comparison between DNA motifs, such as those found to be over-represented in the promoter regions of co-regulated genes, and the transcription factor-binding sites described in the literature. The system also provides an useful mechanism for grouping a list of genes (for instance a set of genes with similar expression profiles as revealed by microarray analysis) based on their regulatory associations with known transcription factors.
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Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Cited by
A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans
Nobile, C. J., Fox, E. P., Nett, J. E., Sorrells, T. R., Mitrovich, Q. M., Hernday, A. D., Tuch, B. B., Andes, D. R., & Johnson, A. D. (2012) · Cell · doi:10.1016/j.cell.2011.10.048 · Cited by 711
A Phenotypic Profile of the Candida albicans Regulatory Network
Homann, O. R., Dea, J., Noble, S. M., & Johnson, A. D. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000783 · Cited by 444
“The list of candidate genes for inclusion in our transcriptional regulator knockout (TRKO) library was compiled from multiple sources (Dataset S1; [7,15–22]).”
MethodAnalysis of combinatorial cis-regulation in synthetic and genomic promoters
Gertz, J., Siggia, E. D., & Cohen, B. A. (2009) · Nature · doi:10.1038/nature07521 · Cited by 304
Adaptive Response and Tolerance to Weak Acids in Saccharomyces cerevisiae : A Genome-Wide View
Mira, N. P., Teixeira, M. C., & Sá-Correia, I. (2010) · OMICS: A Journal of Integrative Biology · doi:10.1089/omi.2010.0072 · Cited by 295
Self-citationGeiler-Samerotte, K. A., Dion, M. F., Budnik, B. A., Wang, S. M., Hartl, D. L., & Drummond, D. A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1017570108 · Cited by 293
Metadata
- Authors
- Teixeira, M. C.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2006-01-01
- Volume
- 34
- Issue
- 90001
- Pages
- D446-D451
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W1990987722
- Cited by
- 490
- References
- 1
- FWCI
- 8.18
- Type
- journal article
- Language
- en
- Open access
- gold
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