RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

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RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

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Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks

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Evolvability and hierarchy in rewired bacterial gene networks

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Escherichia coli Histone-Like Protein H-NS Preferentially Binds to Horizontally Acquired DNA in Association with RNA Polymerase

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High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes

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Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

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Diversity of Human Vaginal Bacterial Communities and Associations with Clinically Defined Bacterial Vaginosis

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Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

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Comparative Genomic Reconstruction of Transcriptional Regulatory Networks in Bacteria

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Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere

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Critical Dynamics in Genetic Regulatory Networks: Examples from Four Kingdoms

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Comparing Statistical Methods for Constructing Large Scale Gene Networks

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Introduction to Network Analysis in Systems Biology

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Multiple sequence alignment for phylogenetic purposes

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Optimal Signal Processing in Small Stochastic Biochemical Networks

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Metabolic Regulation of a Bacterial Cell System with Emphasis onEscherichia coliMetabolism

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Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data

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Persistence drives gene clustering in bacterial genomes

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Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes

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Prokaryotic genome regulation: A revolutionary paradigm

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RegTransBase - A Database Of Regulatory Sequences and Interactions in a Wide Range of \nProkaryotic Genomes

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The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response

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A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli

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The relative value of operon predictions

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Global gene expression analysis of glucose overflow metabolism in Escherichia coli and reduction of aerobic acetate formation

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A metabolic network in the evolutionary context: Multiscale structure and modularity

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Co-Regulation of Metabolic Genes Is Better Explained by Flux Coupling Than by Network Distance

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Motifs emerge from function in model gene regulatory networks

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Network analyses in microbiome based on high-throughput multi-omics data

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Dissecting the logical types of network control in gene expression profiles

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Inference of Regulatory Gene Interactions from Expression Data Using Three‐Way Mutual Information

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Origins of Flagellar Gene Operons and Secondary Flagellar Systems

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Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli

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Theoretical and empirical quality assessment of transcription factor-binding motifs

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A linguistic rule-based approach to extract drug-drug interactions from pharmacological documents

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Recombineering with tolC as a Selectable/Counter-selectable Marker: remodeling the rRNA Operons of Escherichia coli

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Topology of the global regulatory network of carbon limitation in Escherichia coli

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Dynamics of the chili pepper transcriptome during fruit development

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A predicted operon map for Mycobacterium tuberculosis

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