The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
Open accessAbstract
Long terminal repeat retrotransposons (LTR elements) are ubiquitous eukaryotic transposable elements. They play important roles in the evolution of genes and genomes. Ever-growing amount of genomic sequences of many organisms present a great challenge to fast identifying them. That is the first and indispensable step to study their structure, distribution, functions and other biological impacts. However, until today, tools for efficient LTR retrotransposon discovery are very limited. Thus, we developed LTR_FINDER web server. Given DNA sequences, it predicts locations and structure of full-length LTR retrotransposons accurately by considering common structural features. LTR_FINDER is a system capable of scanning large-scale sequences rapidly and the first web server for ab initio LTR retrotransposon finding. We illustrate its usage and performance on the genome of Saccharomyces cerevisiae. The web server is freely accessible at http://tlife.fudan.edu.cn/ltr_finder/.
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Cites
Molecular paleontology of transposable elements in the Drosophila melanogaster genome
Kapitonov, V. V., & Jurka, J. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0732024100 · Cited by 288
Long terminal repeat retrotransposons of Oryza sativa
McCarthy, E. M., Liu, J., Lizhi, G., & McDonald, J. F. (2002) · Genome Biology · doi:10.1186/gb-2002-3-10-research0053 · Cited by 139
Cited by
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Ellinghaus, D., Kurtz, S., & Willhoeft, U. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-18 · Cited by 1,641
The genome of the cucumber,Cucumis sativus L
Huang, S., Li, R., Zhang, Z., Li, L., Gu, X., Fan, W., Lucas, W. J., Wang, X., Xie, B., Ni, P., et al. (2009) · Nature Genetics · doi:10.1038/ng.475 · Cited by 1,490
Genome sequence of the cultivated cotton Gossypium arboreum
Li, F., Fan, G., Wang, K., Sun, F., Yuan, Y., Song, G., Li, Q., Ma, Z., Lu, C., Zou, C., et al. (2014) · Nature Genetics · doi:10.1038/ng.2987 · Cited by 870
Argout, X., Salse, J., Aury, J.-M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., et al. (2011) · Nature Genetics · doi:10.1038/ng.736 · Cited by 746
van der Ven (2019) · doi:10.12688/f1000research · Cited by 599
Metadata
- Authors
- Xu, Z., & Wang, H.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2007-05-08
- Volume
- 35
- Issue
- Web Server
- Pages
- W265-W268
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2082330286
- Cited by
- 2,607
- References
- 2
- FWCI
- 15.79
- Type
- journal article
- Language
- en
- Open access
- gold
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